Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p37370 Brassica napus
A10p01910 Brassica napus
Aa31LG1G9210 Aethionema arabicum
Aa31LG3G11130 Aethionema arabicum
Actinidia00724 Actinidia chinensis
Actinidia24311 Actinidia chinensis
Ah.01g002340 Amaranthus hybridus
AL1G12880 Arabidopsis lyrata
AL1G67150 Arabidopsis lyrata
Aqoxy2G03197 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea
AT1G03360 Arabidopsis thaliana
ATR0626G226 Amborella trichopoda
Atru.chr5.1333 Acer truncatum
AUR62006496 Chenopodium quinoa
AUR62006497 Chenopodium quinoa
AUR62025039 Chenopodium quinoa
BcaC05g24537 Brassica carinata
BcaC05g24540 Brassica carinata
BcaC07g36966 Brassica carinata
BcaC07g36969 Brassica carinata
BolC5t28966H Brassica oleracea
BolC8t46855H Brassica oleracea
BraA08t35634Z Brassica rapa
BraA10t42464Z Brassica rapa
C05p01850 Brassica napus
C08p00550 Brassica napus
C08p00570 Brassica napus
CAN.G956.9 Capsicum annuum
CANSAT25G0403 Cannabis sativa
CANSAT25G2682 Cannabis sativa
CARHR002730 Cardamine hirsuta
CARHR054000 Cardamine hirsuta
CARHR054010 Cardamine hirsuta
CARHR054740 Cardamine hirsuta
CARHR120580 Cardamine hirsuta
Carub.0001s0248 Capsella rubella
Carub.0002s0706 Capsella rubella
Ca_09695_v3 Cicer arietinum L.
CBR_g31324 Chara braunii
CBR_g31328 Chara braunii
Cc00_g20190 Coffea canephora
Cc04_g13300 Coffea canephora
CDE05G1996 Ceratophyllum demersum
CDE07G1085 Ceratophyllum demersum
Cfa006082 Carpinus fangiana
Cfa025641 Carpinus fangiana
Ciclev10021133m.g Citrus clementina
CiPaw.08G102200 Carya illinoinensis
ClCG04G004880 Citrullus lanatus
ClCG06G018160 Citrullus lanatus
COL.COLO4_22372 Corchorus olitorius
Cpa.g.sc9.125 Carica papaya
Cre12.g496450 Chlamydomonas reinhardtii
CsaV3_1G000270 Cucumis sativus L.
CsaV3_4G031760 Cucumis sativus L.
CSS0023645 Camellia sinensis var. sinensis
CSS0050172 Camellia sinensis var. sinensis
DCAR_018396 Daucus carota
Dinv32970 Davidia involucrata
Duzib147G0102 Durio zibethinus
Duzib264G0721 Durio zibethinus
ECA247G0279 Erigeron canadensis
EL10Ac9g22404 Beta vulgaris
Eucgr.H01542 Eucalyptus grandis
FAN15G3052 Fragaria x ananassa
FAN20G2589 Fragaria x ananassa
FAN24G2543 Fragaria x ananassa
FAN27G1503 Fragaria x ananassa
FvH4_2g24140 Fragaria vesca
Glyma.03G149702 Glycine max
Glyma.17G181200 Glycine max
Glyma.19G152700 Glycine max
Gohir.A10G082900 Gossypium hirsutum
Gohir.A11G223700 Gossypium hirsutum
Gohir.D10G105100 Gossypium hirsutum
Gohir.D11G226800 Gossypium hirsutum
Gorai.002G150000 Gossypium raimondii
Gorai.011G114800 Gossypium raimondii
GSVIVG01011064001 Vitis vinifera
HanXRQChr15g0466601 Helianthus annuus
Haze_04767 Corylus avellana
Haze_26173 Corylus avellana
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla
HPP92_017959 Vanilla planifolia
Hund26620 Selenicereus undatus
Lalb_Chr12g0205491 Lupinus albus
Lalb_Chr21g0313041 Lupinus albus
Lj1A45T35 Lonicera japonica
Lj1g0001578 Lotus japonicus
Lju41A26G23 Lonicera japonica
Lsat_1_v5_gn_2_2860 Lactuca sativa
Lsat_1_v5_gn_2_2880 Lactuca sativa
Lsat_1_v5_gn_9_1881 Lactuca sativa
Manes.17G011600 Manihot esculenta
Mapoly0036s0012 Marchantia polymorpha
MBI19_g08244_MAGBIO Magnolia biondii
MBI19_g15845_MAGBIO Magnolia biondii
MCO01G628 Micromonas commoda
MD03G1271400 Malus domestica
MD11G1292000 Malus domestica
Medtr2g093790 Medicago truncatula
Medtr4g121550 Medicago truncatula
MELO3C008880.2 Cucumis melo
MELO3C026181.2 Cucumis melo
Migut.D00252 Erythranthe guttata
MSTRG.21585 Avicennia marina
Nitab4.5_0001323g0060 Nicotiana tabacum
Nitab4.5_0002927g0060 Nicotiana tabacum
Nitab4.5_0006227g0010 Nicotiana tabacum
Nn1g08362 Nelumbo nucifera
Oeu006227.1 Olea europaea
Oeu047890.1 Olea europaea
Os04g0520000 Oryza sativa ssp. japonica
Peaxi162Scf00941g00114 Petunia axillaris
PGR119G1155 Punica granatum
PGSC0003DMG400003807 Solanum tuberosum
Phvul.001G147600 Phaseolus vulgaris
Potri.003G194400 Populus trichocarpa
Pp3c3_30640 Physcomitrium patens
PRCOL_00003283 Prasinoderma coloniale
Prupe.8G247600 Prunus persica
Prupe.8G248900 Prunus persica
Psat3g002760 Pisum sativum
Psat4g023240 Pisum sativum
Psat4g225440 Pisum sativum
Psat5g228640 Pisum sativum
PSO170G6090 Papaver somniferum
PSO302G0160 Papaver somniferum
QL02p002453 Quercus lobata
QL09p051599 Quercus lobata
QL09p052305 Quercus lobata
QL11p055012 Quercus lobata
RcHm_v2.0_Chr6g0291951 Rosa chinensis
Rhsim13G0021500 Rhododendron simsii
Sabra03G0145100 Salix brachista
SalBow2G0531 Salvia bowleyana
SalBow3G2805 Salvia bowleyana
Sc14g0002440 Simmondsia chinensis
Sed0001639 Sechium edule
SEGI_29460 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00438 Striga asiatica
SHI31141 Sapria himalayana
SMO351G0040 Selaginella moellendorffii
Solyc09g074090.3 Solanum lycopersicum
Sopen09g028910 Solanum pennellii
Sp1g02360 Schrenkiella parvula
TAR633G0251 Trochodendron aralioides
THA.LOC104815950 Tarenaya hassleriana
Thecc.01G117300 Theobroma cacao
Thhalv10008200m.g Eutrema salsugineum
TPR.G11548 Trifolium pratense
TPR.G16860 Trifolium pratense
TPR.G23233 Trifolium pratense
TWI14G0547 Tripterygium wilfordii
unitig_0.g1195 Utricularia gibba
vmacro02540 Vaccinium macrocarpon
VMungo1383G2558 Vigna mungo
Zm00001eb067490 Zea mays
Zm00001eb148160 Zea mays

User provided reference genes

Program Settings