Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG5G16130 Aethionema arabicum
Aa31LG5G1860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1246 Anthoceros agrestis
Actinidia16843 Actinidia chinensis
Actinidia21511 Actinidia chinensis
Actinidia27597 Actinidia chinensis
Actinidia35536 Actinidia chinensis
Ah.15g092930 Amaranthus hybridus
AL3G16400 Arabidopsis lyrata
AL6G38910 Arabidopsis lyrata
AL6G50940 Arabidopsis lyrata
AL88U10040 Arabidopsis lyrata
Aqoxy1G00262 Aquilegia oxysepala
Aqoxy335s001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6RK1TK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BDV9DF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RB8T8D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UBBZ0M Arachis hypogaea
AT3G05710 Arabidopsis thaliana
AT4G02195 Arabidopsis thaliana
AT5G26980 Arabidopsis thaliana
ATR0706G243 Amborella trichopoda
Atru.chr2.131 Acer truncatum
Atru.chr5.1073 Acer truncatum
AUR62000704 Chenopodium quinoa
AUR62005255 Chenopodium quinoa
AUR62008732 Chenopodium quinoa
AUR62025504 Chenopodium quinoa
BcaB01g02069 Brassica carinata
BcaC04g24047 Brassica carinata
BcaC05g29787 Brassica carinata
BcaC05g30095 Brassica carinata
BcaC09g47843 Brassica carinata
BolC1t05677H Brassica oleracea
BolC5t34810H Brassica oleracea
BolC9t53110H Brassica oleracea
BraA01t04488Z Brassica rapa
BraA05t22949Z Brassica rapa
BraA09t35823Z Brassica rapa
C05p61520 Brassica napus
CAN.G1273.17 Capsicum annuum
CAN.G668.35 Capsicum annuum
CANSAT54G0306 Cannabis sativa
CARHR056200 Cardamine hirsuta
CARHR080160 Cardamine hirsuta
CARHR186560 Cardamine hirsuta
CARHR248830 Cardamine hirsuta
CARHR250040 Cardamine hirsuta
CARHR250410 Cardamine hirsuta
Carub.0003s0506 Capsella rubella
Carub.0006s2460 Capsella rubella
Carub.0006s3497 Capsella rubella
Ca_10158_v3 Cicer arietinum L.
CBR_g24125 Chara braunii
CBR_g45822 Chara braunii
CBR_g50624 Chara braunii
Cc02_g34600 Coffea canephora
CDE05G0734 Ceratophyllum demersum
CDE05G1110 Ceratophyllum demersum
CDE05G3251 Ceratophyllum demersum
CDE11G0912 Ceratophyllum demersum
Cfa005860 Carpinus fangiana
Cfa006678 Carpinus fangiana
Ciclev10001826m.g Citrus clementina
Ciclev10023574m.g Citrus clementina
Ciclev10024493m.g Citrus clementina
CiPaw.07G026700 Carya illinoinensis
CiPaw.07G113500 Carya illinoinensis
CiPaw.08G157600 Carya illinoinensis
ClCG02G015160 Citrullus lanatus
ClCG09G005420 Citrullus lanatus
COL.COLO4_04125 Corchorus olitorius
COL.COLO4_23289 Corchorus olitorius
Cpa.g.sc151.43 Carica papaya
Cpa.g.sc48.131 Carica papaya
Cre12.g507450 Chlamydomonas reinhardtii
CsaV3_2G006850 Cucumis sativus L.
CsaV3_7G029670 Cucumis sativus L.
CSS0019576 Camellia sinensis var. sinensis
CSS0023652 Camellia sinensis var. sinensis
CSS0026475 Camellia sinensis var. sinensis
DCAR_005411 Daucus carota
DCAR_029519 Daucus carota
Dinv24416 Davidia involucrata
Dinv30859 Davidia involucrata
Dinv33087 Davidia involucrata
Duzib106G0041 Durio zibethinus
Duzib128G0710 Durio zibethinus
Duzib133G0648 Durio zibethinus
Duzib138G0267 Durio zibethinus
Duzib177G0533 Durio zibethinus
ECA234G4542 Erigeron canadensis
ECA240G4463 Erigeron canadensis
EL10Ac4g09841 Beta vulgaris
EL10Ac7g17591 Beta vulgaris
Eucgr.B02078 Eucalyptus grandis
FAN02G3164 Fragaria x ananassa
FAN05G2850 Fragaria x ananassa
FAN09G0459 Fragaria x ananassa
FAN14G2054 Fragaria x ananassa
FAN24G2757 Fragaria x ananassa
FvH4_6g07100 Fragaria vesca
Glyma.03G217400 Glycine max
Glyma.10G149000 Glycine max
Glyma.19G214000 Glycine max
Glyma.20G239100 Glycine max
Gohir.A11G112400 Gossypium hirsutum
Gohir.A11G271300 Gossypium hirsutum
Gohir.A13G111350 Gossypium hirsutum
Gohir.D11G117150 Gossypium hirsutum
Gohir.D11G117500 Gossypium hirsutum
Gohir.D11G281500 Gossypium hirsutum
Gohir.D13G113900 Gossypium hirsutum
Gorai.007G125500 Gossypium raimondii
Gorai.007G125900 Gossypium raimondii
Gorai.007G303900 Gossypium raimondii
Gorai.013G127800 Gossypium raimondii
GSVIVG01028068001 Vitis vinifera
GSVIVG01031201001 Vitis vinifera
HanXRQChr03g0073791 Helianthus annuus
HanXRQChr09g0248781 Helianthus annuus
HanXRQChr10g0293391 Helianthus annuus
HanXRQChr17g0544481 Helianthus annuus
Haze_04093 Corylus avellana
Haze_04989 Corylus avellana
Hma1.2p1_0024F.1_g015950 Hydrangea macrophylla
Hma1.2p1_0093F.1_g046980 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078780 Hydrangea macrophylla
Hma1.2p1_0212F.1_g090200 Hydrangea macrophylla
Hma1.2p1_0472F.1_g159810 Hydrangea macrophylla
Hma1.2p1_0525F.1_g172670 Hydrangea macrophylla
Hma1.2p1_0835F.1_g225790 Hydrangea macrophylla
Hma1.2p1_1266F.1_g271450 Hydrangea macrophylla
Hma1.2p1_1320F.1_g275360 Hydrangea macrophylla
HPP92_002505 Vanilla planifolia
HPP92_002555 Vanilla planifolia
Hund21733 Selenicereus undatus
Lalb_Chr02g0147961 Lupinus albus
Lalb_Chr21g0310381 Lupinus albus
Lj1g0001402 Lotus japonicus
Lj5C342T11 Lonicera japonica
Lj5C342T12 Lonicera japonica
Lj5g0011462 Lotus japonicus
Lj9A205T17 Lonicera japonica
Lsat_1_v5_gn_5_102260 Lactuca sativa
Lsat_1_v5_gn_9_123001 Lactuca sativa
Manes.01G223800 Manihot esculenta
Manes.09G174700 Manihot esculenta
Mapoly0042s0041 Marchantia polymorpha
MBI11_g15922_MAGBIO Magnolia biondii
MBI15_g08886_MAGBIO Magnolia biondii
MBI15_g18243_MAGBIO Magnolia biondii
MBI17_g13386_MAGBIO Magnolia biondii
MBI17_g13387_MAGBIO Magnolia biondii
MBI18_g05908_MAGBIO Magnolia biondii
MBI19_g14286_MAGBIO Magnolia biondii
MCO11G264 Micromonas commoda
MD04G1196100 Malus domestica
MD12G1209100 Malus domestica
Medtr1g083790 Medicago truncatula
Medtr7g109165 Medicago truncatula
MELO3C004205.2 Cucumis melo
MELO3C015953.2 Cucumis melo
Migut.B00985 Erythranthe guttata
MSTRG.27954 Avicennia marina
MSTRG.5132 Avicennia marina
Nitab4.5_0000116g0200 Nicotiana tabacum
Nitab4.5_0002454g0050 Nicotiana tabacum
Nitab4.5_0002715g0150 Nicotiana tabacum
Nitab4.5_0014337g0010 Nicotiana tabacum
Nn3g21595 Nelumbo nucifera
Nn4g25690 Nelumbo nucifera
Oeu020898.1 Olea europaea
Oeu038931.1 Olea europaea
Os06g0116300 Oryza sativa ssp. japonica
Peaxi162Scf00001g00312 Petunia axillaris
Peaxi162Scf00073g00129 Petunia axillaris
PGR031G0731 Punica granatum
PGR083G1333 Punica granatum
PGSC0003DMG400024732 Solanum tuberosum
PGSC0003DMG400031799 Solanum tuberosum
Phvul.001G210900 Phaseolus vulgaris
Phvul.007G199700 Phaseolus vulgaris
Potri.002G200400 Populus trichocarpa
Potri.005G020800 Populus trichocarpa
Potri.013G011100 Populus trichocarpa
Pp3c9_13620 Physcomitrium patens
PRCOL_00002987 Prasinoderma coloniale
Prupe.6G316200 Prunus persica
Psat3g021120 Pisum sativum
Psat6g152360 Pisum sativum
PSO170G4057 Papaver somniferum
PSO357G0212 Papaver somniferum
QL03p017968 Quercus lobata
QL12p028673 Quercus lobata
RcHm_v2.0_Chr3g0456681 Rosa chinensis
RcHm_v2.0_Chr3g0494921 Rosa chinensis
Rhsim05G0134300 Rhododendron simsii
Rhsim11G0092800 Rhododendron simsii
Sabra05G0026800 Salix brachista
Sabra13G0009800 Salix brachista
SalBow7G0446 Salvia bowleyana
Sc05g0003420 Simmondsia chinensis
Sc09g0002770 Simmondsia chinensis
Sed0002838 Sechium edule
Sed0005074 Sechium edule
Sed0016078 Sechium edule
SEGI_14664 Sequoiadendron giganteum
SEGI_35882 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01963 Striga asiatica
SGA_v2.0_scaffold53G19305 Striga asiatica
SMO266G0059 Selaginella moellendorffii
Solyc01g100170.3 Solanum lycopersicum
Solyc09g075530.3 Solanum lycopersicum
Sopen01g043660 Solanum pennellii
Sopen09g030320 Solanum pennellii
Sp2g21070 Schrenkiella parvula
Sp3g04590 Schrenkiella parvula
Sp6g02080 Schrenkiella parvula
TAR365G0165 Trochodendron aralioides
TAR636G0565 Trochodendron aralioides
THA.LOC104801293 Tarenaya hassleriana
THA.LOC104818739 Tarenaya hassleriana
THA.LOC104825954 Tarenaya hassleriana
Thecc.01G307500 Theobroma cacao
Thecc.05G319400 Theobroma cacao
Thhalv10021138m.g Eutrema salsugineum
Thhalv10028804m.g Eutrema salsugineum
Thhalv10028977m.g Eutrema salsugineum
TPR.G14950 Trifolium pratense
TPR.G9608 Trifolium pratense
TWI12G0132 Tripterygium wilfordii
TWI56G1385 Tripterygium wilfordii
unitig_37.g12624 Utricularia gibba
unitig_46.g18372 Utricularia gibba
vmacro01540 Vaccinium macrocarpon
vmacro19716 Vaccinium macrocarpon
VMungo0720G2995 Vigna mungo
VMungo1371G0001 Vigna mungo
VMungo1383G0689 Vigna mungo
Zm00001eb120350 Zea mays
Zm00001eb221480 Zea mays

User provided reference genes

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