Gene: AT4G02195

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G02195
  • Transcript Identifier AT4G02195.1
  • Gene Type Coding gene
  • Location Chr4 : 970099-972192 : negative

Gene Family Information

  • ID HOM05D002869
  • #Genes/#Species 242/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G02195.1
  • symbol SYP42
  • Alias ATSYP42,ATTLG2B,TLG2B
  • uniprot Q9SWH4

Descriptions

  • Description syntaxin of plants 42
  • Computational description syntaxin of plants 42 (SYP42); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 41 (TAIR:AT5G26980.2); Has 2124 Blast hits to 2113 proteins in 267 species: Archae - 1; Bacteria - 23; Metazoa - 914; Fungi - 468; Plants - 361; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0006886
IEA
GOA Databaseintracellular protein transport
GO:0006886
IBA
TAS
Gene Ontologyintracellular protein transport1 2
GO:0015031
IEA
GOA Databaseprotein transport
GO:0048278
IBA
Gene Ontologyvesicle docking2
GO:0006906
IBA
Gene Ontologyvesicle fusion2
GO:1900150
IGI
Gene Ontologyregulation of defense response to fungus3
GO:0009306
IGI
Gene Ontologyprotein secretion3
GO:0007034
IGI
Gene Ontologyvacuolar transport3
GO:0007030
IGI
Gene OntologyGolgi organization3
GO:0061025
TAS
Gene Ontologymembrane fusion1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005484
IEA
GOA DatabaseSNAP receptor activity
GO:0005484
IBA
TAS
Gene OntologySNAP receptor activity1 2
GO:0000149
IBA
Gene OntologySNARE binding2
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IBA
Gene Ontologyintegral component of membrane2
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0012505
IBA
Gene Ontologyendomembrane system2
GO:0031201
IBA
Gene OntologySNARE complex2
GO:0030140
TAS
Gene Ontologytrans-Golgi network transport vesicle1
GO:0005802
IDA
TAS
Gene Ontologytrans-Golgi network1 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000727 Target SNARE coiled-coil homology domain
IPR010989 SNARE
IPR006011 Syntaxin, N-terminal domain
Mapman id Description
22.3.5.1.1.4 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qa-type SNARE components.SYP4-group component