Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p06070 Brassica napus
A09p49140 Brassica napus
Aa31LG10G11050 Aethionema arabicum
Aa31LG3G6590 Aethionema arabicum
Aa31LG5G19170 Aethionema arabicum
Aa31LG6G10330 Aethionema arabicum
Aa31sc154G80 Aethionema arabicum
Aa31sc158G50 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2831 Anthoceros agrestis
Actinidia29736 Actinidia chinensis
Actinidia33891 Actinidia chinensis
Ah.10g036070 Amaranthus hybridus
AL4G38230 Arabidopsis lyrata
AL5G37490 Arabidopsis lyrata
Aqoxy4G02183 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2Y6RK6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74BDFY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9B096Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AD63MF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F8DZ4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5P6KQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RB5H3E Arachis hypogaea
AT2G40410 Arabidopsis thaliana
AT3G56170 Arabidopsis thaliana
ATR0594G145 Amborella trichopoda
Atru.chr12.132 Acer truncatum
Atru.chr12.133 Acer truncatum
AUR62012324 Chenopodium quinoa
AUR62022966 Chenopodium quinoa
BcaB01g00023 Brassica carinata
BcaB01g00024 Brassica carinata
BcaB01g00025 Brassica carinata
BcaC02g12156 Brassica carinata
BcaC07g39931 Brassica carinata
BcaC07g39932 Brassica carinata
BolC4t22320H Brassica oleracea
BolC7t41084H Brassica oleracea
BolC8t50766H Brassica oleracea
BolC8t50767H Brassica oleracea
BolC8t50768H Brassica oleracea
BraA05t19570Z Brassica rapa
BraA09t40367Z Brassica rapa
C04p06990 Brassica napus
C07p06610 Brassica napus
C08p31460 Brassica napus
C08p31470 Brassica napus
C08p31480 Brassica napus
CAN.G2493.1 Capsicum annuum
CAN.G256.5 Capsicum annuum
CAN.G256.6 Capsicum annuum
CANSAT56G2981 Cannabis sativa
CARHR135520 Cardamine hirsuta
CARHR166320 Cardamine hirsuta
Carub.0004s2266 Capsella rubella
Carub.0005s2295 Capsella rubella
Ca_06011_v3 Cicer arietinum L.
CBR_g6385 Chara braunii
Cc02_g05810 Coffea canephora
CDE06G1620 Ceratophyllum demersum
CDE07G1018 Ceratophyllum demersum
Cfa001243 Carpinus fangiana
Cfa001244 Carpinus fangiana
Ciclev10032052m.g Citrus clementina
CiPaw.01G303100 Carya illinoinensis
ClCG07G004750 Citrullus lanatus
COL.COLO4_25814 Corchorus olitorius
COL.COLO4_25815 Corchorus olitorius
Cpa.g.sc19.108 Carica papaya
Cre01.g048150 Chlamydomonas reinhardtii
CsaV3_5G010670 Cucumis sativus L.
CSS0023990 Camellia sinensis var. sinensis
CSS0025620 Camellia sinensis var. sinensis
CSS0041964 Camellia sinensis var. sinensis
DCAR_011866 Daucus carota
Dinv10567 Davidia involucrata
Dinv21803 Davidia involucrata
Duzib114G0231 Durio zibethinus
Duzib114G0720 Durio zibethinus
ECA232G0618 Erigeron canadensis
ECA232G2578 Erigeron canadensis
ECA232G3315 Erigeron canadensis
ECA238G4654 Erigeron canadensis
EL10Ac2g04305 Beta vulgaris
EL10Ac2g04917 Beta vulgaris
Eucgr.J00157 Eucalyptus grandis
Eucgr.J00158 Eucalyptus grandis
Eucgr.J00159 Eucalyptus grandis
Eucgr.J00160 Eucalyptus grandis
Eucgr.J00161 Eucalyptus grandis
FAN01G2059 Fragaria x ananassa
FAN03G0925 Fragaria x ananassa
FAN06G2818 Fragaria x ananassa
FAN06G5128 Fragaria x ananassa
FAN10G1113 Fragaria x ananassa
FvH4_7g25420 Fragaria vesca
Glyma.02G260600 Glycine max
Gohir.A06G160000 Gossypium hirsutum
Gohir.A10G240300 Gossypium hirsutum
Gohir.A10G240400 Gossypium hirsutum
Gohir.D06G165800 Gossypium hirsutum
Gohir.D10G252060 Gossypium hirsutum
Gohir.D10G252100 Gossypium hirsutum
Gohir.D10G252200 Gossypium hirsutum
Gohir.D10G252266 Gossypium hirsutum
Gohir.D10G252332 Gossypium hirsutum
Gohir.D10G252500 Gossypium hirsutum
Gohir.D10G252540 Gossypium hirsutum
Gohir.D10G252560 Gossypium hirsutum
Gohir.D10G252580 Gossypium hirsutum
Gohir.D10G252600 Gossypium hirsutum
Gohir.D10G252700 Gossypium hirsutum
Gorai.010G193300 Gossypium raimondii
Gorai.011G292600 Gossypium raimondii
Gorai.011G292800 Gossypium raimondii
Gorai.011G292900 Gossypium raimondii
Gorai.011G293000 Gossypium raimondii
Gorai.N022700 Gossypium raimondii
Gorai.N022800 Gossypium raimondii
GSVIVG01032729001 Vitis vinifera
HanXRQChr04g0099931 Helianthus annuus
HanXRQChr04g0115411 Helianthus annuus
HanXRQChr05g0152691 Helianthus annuus
HanXRQChr07g0203541 Helianthus annuus
HanXRQChr07g0203551 Helianthus annuus
HanXRQChr09g0252181 Helianthus annuus
HanXRQChr11g0331751 Helianthus annuus
HanXRQChr11g0350501 Helianthus annuus
HanXRQChr15g0493851 Helianthus annuus
HanXRQChr16g0507401 Helianthus annuus
HanXRQChr16g0513591 Helianthus annuus
Haze_17308 Corylus avellana
Haze_17309 Corylus avellana
Haze_17314 Corylus avellana
Hma1.2p1_0479F.1_g161730 Hydrangea macrophylla
HPP92_001133 Vanilla planifolia
Hund13521 Selenicereus undatus
Hund15864 Selenicereus undatus
Lalb_Chr04g0250341 Lupinus albus
Lj8A59T33 Lonicera japonica
LjContig00357g0017303 Lotus japonicus
Lju41A22G19 Lonicera japonica
Lsat_1_v5_gn_2_125840 Lactuca sativa
Lsat_1_v5_gn_9_58540 Lactuca sativa
Lsat_1_v5_gn_9_58560 Lactuca sativa
Lsat_1_v5_gn_9_60581 Lactuca sativa
Manes.07G136500 Manihot esculenta
Manes.10G007000 Manihot esculenta
MBI15_g03643_MAGBIO Magnolia biondii
MBI15_g23055_MAGBIO Magnolia biondii
MBI19_g13591_MAGBIO Magnolia biondii
MBI19_g24369_MAGBIO Magnolia biondii
MD01G1160800 Malus domestica
MD07G1228600 Malus domestica
MD07G1228800 Malus domestica
Medtr5g083720 Medicago truncatula
Medtr5g083730 Medicago truncatula
MELO3C020101.2 Cucumis melo
Migut.F00615 Erythranthe guttata
MSTRG.27293 Avicennia marina
Nitab4.5_0001291g0040 Nicotiana tabacum
Nitab4.5_0002854g0060 Nicotiana tabacum
Nn2g11039 Nelumbo nucifera
Oeu008079.1 Olea europaea
Oeu008080.1 Olea europaea
Os01g0166100 Oryza sativa ssp. japonica
Os01g0166300 Oryza sativa ssp. japonica
Os11g0109500 Oryza sativa ssp. japonica
Os12g0109200 Oryza sativa ssp. japonica
Os12g0255200 Oryza sativa ssp. japonica
Peaxi162Scf00284g00136 Petunia axillaris
PGR044G0693 Punica granatum
PGR044G1828 Punica granatum
PGR044G1940 Punica granatum
PGSC0003DMG400017899 Solanum tuberosum
Phvul.008G219500 Phaseolus vulgaris
Potri.008G074800 Populus trichocarpa
Potri.010G182500 Populus trichocarpa
Pp3c11_3120 Physcomitrium patens
Pp3c9_13310 Physcomitrium patens
Prupe.2G258400 Prunus persica
Prupe.2G258500 Prunus persica
Prupe.2G258700 Prunus persica
Psat2g029160 Pisum sativum
PSO017G0703 Papaver somniferum
PSO017G0967 Papaver somniferum
PSO017G1323 Papaver somniferum
PSO017G2491 Papaver somniferum
PSO017G3623 Papaver somniferum
PSO017G4072 Papaver somniferum
PSO017G6199 Papaver somniferum
PSO017G7171 Papaver somniferum
PSO170G2462 Papaver somniferum
PSO304G0015 Papaver somniferum
PSO304G0021 Papaver somniferum
PSO339G0721 Papaver somniferum
PSO349G0073 Papaver somniferum
PSO350G0001 Papaver somniferum
PSO384G1741 Papaver somniferum
PSO384G4277 Papaver somniferum
PSO384G4732 Papaver somniferum
PSO575G0002 Papaver somniferum
PSO611G0002 Papaver somniferum
PSO708G0001 Papaver somniferum
PSO832G4151 Papaver somniferum
QL02p000099 Quercus lobata
QL08p064095 Quercus lobata
QL08p064105 Quercus lobata
QL08p064114 Quercus lobata
QL08p064135 Quercus lobata
QL08p064143 Quercus lobata
QL08p064169 Quercus lobata
QL08p064185 Quercus lobata
RcHm_v2.0_Chr1g0371391 Rosa chinensis
RcHm_v2.0_Chr3g0455981 Rosa chinensis
Rhsim03G0149000 Rhododendron simsii
Sabra08G0055400 Salix brachista
Sabra10G0139900 Salix brachista
SalBow3G2057 Salvia bowleyana
Sc10g0002780 Simmondsia chinensis
Sed0006213 Sechium edule
SEGI_12694 Sequoiadendron giganteum
SEGI_22291 Sequoiadendron giganteum
SEGI_36080 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16649 Striga asiatica
SGA_v2.0_scaffold60G20942 Striga asiatica
SHI28867 Sapria himalayana
SMO367G1267 Selaginella moellendorffii
Solyc06g050720.3 Solanum lycopersicum
Sopen06g016280 Solanum pennellii
Sp4g22740 Schrenkiella parvula
Sp5g06330 Schrenkiella parvula
TAR369G0263 Trochodendron aralioides
TAR369G0379 Trochodendron aralioides
THA.LOC104811876 Tarenaya hassleriana
Thecc.04G020600 Theobroma cacao
Thecc.04G084300 Theobroma cacao
Thecc.04G167100 Theobroma cacao
Thecc.05G149600 Theobroma cacao
Thecc.10G008400 Theobroma cacao
Thhalv10006101m.g Eutrema salsugineum
Thhalv10016915m.g Eutrema salsugineum
TPR.G20190 Trifolium pratense
TWI09G0137 Tripterygium wilfordii
unitig_88.g27822 Utricularia gibba
vmacro06914 Vaccinium macrocarpon
vmacro06918 Vaccinium macrocarpon
VMungo0647G0953 Vigna mungo
Zm00001eb123360 Zea mays

User provided reference genes

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