Gene: AT3G56170

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56170
  • Transcript Identifier AT3G56170.1
  • Gene Type Coding gene
  • Location Chr3 : 20842614-20844319 : positive

Gene Family Information

  • ID HOM05D002787
  • #Genes/#Species 248/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56170.1
  • symbol CAN
  • Alias CAN1,calcium dependent nuclease 1
  • uniprot F4IZC5

Descriptions

  • Description Ca-2 dependent nuclease
  • Computational description Ca-2 dependent nuclease (CAN); FUNCTIONS IN: nuclease activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Thermonuclease active site (InterPro:IPR002071); BEST Arabidopsis thaliana protein match is: Staphylococcal nuclease homologue (TAIR:AT2G40410.2); Has 3061 Blast hits to 3061 proteins in 776 species: Archae - 16; Bacteria - 1825; Metazoa - 0; Fungi - 167; Plants - 86; Viruses - 2; Other Eukaryotes - 965 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090305
IDA
Gene Ontologynucleic acid phosphodiester bond hydrolysis1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0004518
IBA
IEA
GOA Databasenuclease activity
GO:0004518
IDA
Gene Ontologynuclease activity1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004519
IEA
GOA Databaseendonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
Gene Ontologycytoplasm3
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035437 SNase-like, OB-fold superfamily
IPR016071 Staphylococcal nuclease (SNase-like), OB-fold
Mapman id Description
35.1 not assigned.annotated