Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01920 Brassica napus
A04p08840 Brassica napus
A08p07050 Brassica napus
Aa31LG11G5800 Aethionema arabicum
Aa31LG9G4490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4370 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3855 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1493 Anthoceros agrestis
Actinidia09422 Actinidia chinensis
Actinidia12133 Actinidia chinensis
Actinidia20375 Actinidia chinensis
Ah.04g162640 Amaranthus hybridus
Ah.09g231140 Amaranthus hybridus
AL6G14590 Arabidopsis lyrata
AL9U10660 Arabidopsis lyrata
Aqoxy1G00530 Aquilegia oxysepala
Aqoxy7G01644 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0A1ABD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5SY970 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LV0WMB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R2JXRC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S9SFIE Arachis hypogaea
AT4G13250 Arabidopsis thaliana
AT5G04900 Arabidopsis thaliana
ATR0315G160 Amborella trichopoda
ATR0733G079 Amborella trichopoda
Atru.BG.6.p Acer truncatum
Atru.chr12.1171 Acer truncatum
Atru.chr7.1359 Acer truncatum
AUR62010985 Chenopodium quinoa
AUR62014298 Chenopodium quinoa
AUR62021494 Chenopodium quinoa
AUR62042102 Chenopodium quinoa
BcaB01g01528 Brassica carinata
BcaB01g05922 Brassica carinata
BcaC02g09436 Brassica carinata
BcaC07g37392 Brassica carinata
BcaNung05156 Brassica carinata
BolC3t12780H Brassica oleracea
BolC4t25835H Brassica oleracea
BolC8t47700H Brassica oleracea
BraA03t09562Z Brassica rapa
BraA04t16578Z Brassica rapa
BraA08t32717Z Brassica rapa
C03p02290 Brassica napus
C04p42720 Brassica napus
C08p08610 Brassica napus
CAN.G210.14 Capsicum annuum
CAN.G56.18 Capsicum annuum
CANSAT56G0849 Cannabis sativa
CANSAT56G2713 Cannabis sativa
CARHR208360 Cardamine hirsuta
CARHR218740 Cardamine hirsuta
Carub.0005s0753 Capsella rubella
Carub.0006s0384 Capsella rubella
Carub.0007s2941 Capsella rubella
Carub.0010s0005 Capsella rubella
Carub.0135s0003 Capsella rubella
Ca_20224_v3 Cicer arietinum L.
Ca_24135_v3 Cicer arietinum L.
CBR_g30763 Chara braunii
Cc02_g32140 Coffea canephora
Cc06_g09730 Coffea canephora
CDE05G2070 Ceratophyllum demersum
CDE05G2942 Ceratophyllum demersum
CDE05G3627 Ceratophyllum demersum
Cfa021561 Carpinus fangiana
Ciclev10008039m.g Citrus clementina
Ciclev10016279m.g Citrus clementina
CiPaw.03G231400 Carya illinoinensis
CiPaw.04G163400 Carya illinoinensis
CiPaw.13G046600 Carya illinoinensis
ClCG06G008580 Citrullus lanatus
ClCG08G008480 Citrullus lanatus
COL.COLO4_06473 Corchorus olitorius
COL.COLO4_34872 Corchorus olitorius
Cpa.g.c44004 Carica papaya
Cpa.g.sc23.100 Carica papaya
Cpa.g.sc937.2 Carica papaya
Cre12.g517700 Chlamydomonas reinhardtii
Cre14.g608800 Chlamydomonas reinhardtii
CsaV3_1G024260 Cucumis sativus L.
CsaV3_6G004470 Cucumis sativus L.
CSS0001462 Camellia sinensis var. sinensis
CSS0015127 Camellia sinensis var. sinensis
CSS0031926 Camellia sinensis var. sinensis
CSS0034731 Camellia sinensis var. sinensis
DCAR_006630 Daucus carota
DCAR_012071 Daucus carota
Dinv01797 Davidia involucrata
Dinv36638 Davidia involucrata
Dinv41609 Davidia involucrata
Duzib114G0326 Durio zibethinus
Duzib150G0136 Durio zibethinus
Duzib168G0380 Durio zibethinus
ECA234G1860 Erigeron canadensis
EL10Ac1g01737 Beta vulgaris
EL10Ac4g08762 Beta vulgaris
EL10Ac5g11556 Beta vulgaris
EL10Ac8g18487 Beta vulgaris
Eucgr.C01035 Eucalyptus grandis
Eucgr.G02650 Eucalyptus grandis
FAN01G0373 Fragaria x ananassa
FAN03G2996 Fragaria x ananassa
FAN06G0484 Fragaria x ananassa
FAN10G2198 Fragaria x ananassa
FAN19G1068 Fragaria x ananassa
FAN23G3117 Fragaria x ananassa
FAN26G2551 Fragaria x ananassa
FAN28G2959 Fragaria x ananassa
FvH4_1g04700 Fragaria vesca
FvH4_7g05100 Fragaria vesca
Glyma.07G085700 Glycine max
Glyma.09G191200 Glycine max
Glyma.15G215900 Glycine max
Gohir.A05G023400 Gossypium hirsutum
Gohir.A10G194300 Gossypium hirsutum
Gohir.D05G024900 Gossypium hirsutum
Gohir.D10G201400 Gossypium hirsutum
Gorai.009G025000 Gossypium raimondii
Gorai.011G226100 Gossypium raimondii
GSVIVG01010106001 Vitis vinifera
GSVIVG01015384001 Vitis vinifera
HanXRQChr06g0179981 Helianthus annuus
HanXRQChr10g0317921 Helianthus annuus
HanXRQChr16g0526711 Helianthus annuus
Haze_03413 Corylus avellana
Haze_05351 Corylus avellana
Haze_25725 Corylus avellana
Haze_25732 Corylus avellana
Hma1.2p1_0018F.1_g013600 Hydrangea macrophylla
Hma1.2p1_1081F.1_g255080 Hydrangea macrophylla
Hma1.2p1_1081F.1_g255090 Hydrangea macrophylla
HPP92_001902 Vanilla planifolia
HPP92_009033 Vanilla planifolia
HPP92_009035 Vanilla planifolia
Hund09209 Selenicereus undatus
Hund22255 Selenicereus undatus
Lalb_Chr03g0032311 Lupinus albus
Lalb_Chr24g0397581 Lupinus albus
Lj2g0023921 Lotus japonicus
Lj3g0000082 Lotus japonicus
Lj7A651T30 Lonicera japonica
Lsat_1_v5_gn_4_26300 Lactuca sativa
Lsat_1_v5_gn_5_103641 Lactuca sativa
Lsat_1_v5_gn_8_95280 Lactuca sativa
Manes.03G021500 Manihot esculenta
Manes.10G072400 Manihot esculenta
Manes.16G115400 Manihot esculenta
Mapoly0054s0037 Marchantia polymorpha
Mapoly0055s0013 Marchantia polymorpha
Mapoly0055s0014 Marchantia polymorpha
Mapoly0115s0053 Marchantia polymorpha
MBI01_g06522_MAGBIO Magnolia biondii
MBI11_g23648_MAGBIO Magnolia biondii
MCO03G236 Micromonas commoda
MCO04G085 Micromonas commoda
MD02G1045900 Malus domestica
MD02G1262200 Malus domestica
MD15G1184100 Malus domestica
Medtr6g088500 Medicago truncatula
Medtr8g044240 Medicago truncatula
MELO3C019918.2 Cucumis melo
MELO3C025347.2 Cucumis melo
Migut.J00739 Erythranthe guttata
Migut.J00740 Erythranthe guttata
Migut.N01882 Erythranthe guttata
Migut.N01884 Erythranthe guttata
Migut.O00433 Erythranthe guttata
MSTRG.19587 Avicennia marina
MSTRG.20472 Avicennia marina
Nitab4.5_0000054g0220 Nicotiana tabacum
Nitab4.5_0000087g0160 Nicotiana tabacum
Nitab4.5_0007401g0010 Nicotiana tabacum
Nitab4.5_0011329g0020 Nicotiana tabacum
Nn2g11727 Nelumbo nucifera
Nn2g14524 Nelumbo nucifera
Oeu055889.1 Olea europaea
Oeu058080.1 Olea europaea
Oeu058676.2 Olea europaea
Os01g0227100 Oryza sativa ssp. japonica
Os03g0654600 Oryza sativa ssp. japonica
Peaxi162Scf00071g00837 Petunia axillaris
Peaxi162Scf00231g00021 Petunia axillaris
PGR142G0531 Punica granatum
PGR142G1148 Punica granatum
PGSC0003DMG400030219 Solanum tuberosum
Phvul.004G163900 Phaseolus vulgaris
Phvul.011G185400 Phaseolus vulgaris
Potri.008G014200 Populus trichocarpa
Potri.018G081200 Populus trichocarpa
Pp3c21_16710 Physcomitrium patens
Pp3c22_17670 Physcomitrium patens
Pp3c9_4070 Physcomitrium patens
PRCOL_00001004 Prasinoderma coloniale
PRCOL_00002236 Prasinoderma coloniale
PRCOL_00006662 Prasinoderma coloniale
Prupe.2G064200 Prunus persica
Prupe.7G232100 Prunus persica
Psat1g043280 Pisum sativum
Psat7g067120 Pisum sativum
PSO063G3478 Papaver somniferum
PSO339G5144 Papaver somniferum
PSO782G3661 Papaver somniferum
PSO832G4222 Papaver somniferum
QL02p085176 Quercus lobata
QL04p049939 Quercus lobata
RcHm_v2.0_Chr1g0331471 Rosa chinensis
RcHm_v2.0_Chr2g0090301 Rosa chinensis
Rhsim03G0241500 Rhododendron simsii
Rhsim04G0167800 Rhododendron simsii
Sabra18G0068300 Salix brachista
SalBow4G0540 Salvia bowleyana
Sc18g0001250 Simmondsia chinensis
Sc20g0001060 Simmondsia chinensis
Sed0006908 Sechium edule
Sed0008596 Sechium edule
SEGI_08892 Sequoiadendron giganteum
SGA_v2.0_scaffold17G08182 Striga asiatica
SGA_v2.0_scaffold196G40984 Striga asiatica
SMO013G0024 Selaginella moellendorffii
Solyc05g032660.4 Solanum lycopersicum
Solyc07g024000.3 Solanum lycopersicum
Sopen05g023370 Solanum pennellii
Sopen07g012230 Solanum pennellii
Sp6g37910 Schrenkiella parvula
Sp7g10750 Schrenkiella parvula
TAR383G0815 Trochodendron aralioides
THA.LOC104808765 Tarenaya hassleriana
THA.LOC104816482 Tarenaya hassleriana
Thecc.09G109400 Theobroma cacao
Thecc.10G126200 Theobroma cacao
Thhalv10013856m.g Eutrema salsugineum
Thhalv10024970m.g Eutrema salsugineum
TPR.G14604 Trifolium pratense
TPR.G35643 Trifolium pratense
TWI34G0459 Tripterygium wilfordii
TWI38G1957 Tripterygium wilfordii
unitig_21.g20046 Utricularia gibba
unitig_26.g8973 Utricularia gibba
unitig_749.g14096 Utricularia gibba
vmacro06219 Vaccinium macrocarpon
vmacro08591 Vaccinium macrocarpon
vmacro08592 Vaccinium macrocarpon
VMungo0464G1482 Vigna mungo
VMungo1127G0070 Vigna mungo
Zm00001eb119410 Zea mays
Zm00001eb218390 Zea mays

User provided reference genes

Program Settings