Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p22760 Brassica napus
A04p12540 Brassica napus
A07p03670 Brassica napus
Aa31LG9G16330 Aethionema arabicum
Aa31LG9G2580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4074 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3584 Anthoceros agrestis
Actinidia06482 Actinidia chinensis
Actinidia08475 Actinidia chinensis
Actinidia08476 Actinidia chinensis
Actinidia08479 Actinidia chinensis
Actinidia26587 Actinidia chinensis
AL7G41080 Arabidopsis lyrata
AL7G50400 Arabidopsis lyrata
Aqoxy3G00648 Aquilegia oxysepala
Aqoxy3G03365 Aquilegia oxysepala
Aqoxy5G00427 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4M845G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J8Q99B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K69D77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KZ49VN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W4M326 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YWJ1Q3 Arachis hypogaea
AT4G14790 Arabidopsis thaliana
AT5G39840 Arabidopsis thaliana
ATR0564G515 Amborella trichopoda
ATR0665G409 Amborella trichopoda
Atru.chr4.2421 Acer truncatum
Atru.chr8.143 Acer truncatum
AUR62032466 Chenopodium quinoa
AUR62033652 Chenopodium quinoa
AUR62033655 Chenopodium quinoa
AUR62034732 Chenopodium quinoa
AUR62042447 Chenopodium quinoa
AUR62044728 Chenopodium quinoa
BcaB06g27380 Brassica carinata
BcaC09g50160 Brassica carinata
BcaNung00333 Brassica carinata
BolC1t02761H Brassica oleracea
BolC4t26212H Brassica oleracea
BraA01t02188Z Brassica rapa
BraA04t16915Z Brassica rapa
C01p28320 Brassica napus
C04p46280 Brassica napus
CAN.G1476.5 Capsicum annuum
CAN.G222.61 Capsicum annuum
CANSAT64G1048 Cannabis sativa
CANSAT78G1249 Cannabis sativa
CARHR221340 Cardamine hirsuta
CARHR262390 Cardamine hirsuta
Carub.0007s2734 Capsella rubella
Carub.0007s3589 Capsella rubella
Ca_04278_v3 Cicer arietinum L.
Ca_20736_v3 Cicer arietinum L.
Ca_24415_v3 Cicer arietinum L.
CBR_g36977 Chara braunii
Cc03_g04080 Coffea canephora
Cc07_g13230 Coffea canephora
CDE04G1324 Ceratophyllum demersum
CDE04G2869 Ceratophyllum demersum
CDE07G1280 Ceratophyllum demersum
Cfa007541 Carpinus fangiana
Cfa008466 Carpinus fangiana
Cfa025470 Carpinus fangiana
Ciclev10004646m.g Citrus clementina
Ciclev10011090m.g Citrus clementina
CiPaw.01G197800 Carya illinoinensis
CiPaw.04G017900 Carya illinoinensis
ClCG05G005000 Citrullus lanatus
COL.COLO4_21524 Corchorus olitorius
COL.COLO4_33292 Corchorus olitorius
Cpa.g.sc170.53 Carica papaya
Cpa.g.sc58.68 Carica papaya
Cpa.g.sc58.73 Carica papaya
Cre06.g270900 Chlamydomonas reinhardtii
CsaV3_3G013050 Cucumis sativus L.
CsaV3_6G000630 Cucumis sativus L.
CSS0028760 Camellia sinensis var. sinensis
CSS0049240 Camellia sinensis var. sinensis
DCAR_001980 Daucus carota
DCAR_024177 Daucus carota
DCAR_024182 Daucus carota
Dinv14024 Davidia involucrata
Dinv19048 Davidia involucrata
Dinv28179 Davidia involucrata
Duzib052G0834 Durio zibethinus
Duzib147G0083 Durio zibethinus
ECA234G0728 Erigeron canadensis
ECA238G2441 Erigeron canadensis
EL10Ac3g06476 Beta vulgaris
EL10Ac6g14001 Beta vulgaris
Eucgr.B01054 Eucalyptus grandis
Eucgr.E04299 Eucalyptus grandis
FAN02G3124 Fragaria x ananassa
FAN03G1187 Fragaria x ananassa
FAN05G0367 Fragaria x ananassa
FAN06G5007 Fragaria x ananassa
FAN12G3299 Fragaria x ananassa
FAN14G0746 Fragaria x ananassa
FAN17G0389 Fragaria x ananassa
FAN22G1889 Fragaria x ananassa
FvH4_4g00720 Fragaria vesca
FvH4_6g26790 Fragaria vesca
FvH4_7g07700 Fragaria vesca
Glyma.01G235700 Glycine max
Glyma.11G007500 Glycine max
Glyma.13G063500 Glycine max
Glyma.19G021800 Glycine max
Gohir.A09G017050 Gossypium hirsutum
Gohir.A09G217900 Gossypium hirsutum
Gohir.D09G015700 Gossypium hirsutum
Gohir.D09G220400 Gossypium hirsutum
Gorai.006G017900 Gossypium raimondii
Gorai.006G241400 Gossypium raimondii
GSVIVG01011395001 Vitis vinifera
GSVIVG01018014001 Vitis vinifera
GSVIVG01018016001 Vitis vinifera
HanXRQChr04g0100821 Helianthus annuus
HanXRQChr07g0191751 Helianthus annuus
HanXRQChr16g0529961 Helianthus annuus
HanXRQChr17g0564431 Helianthus annuus
Haze_11208 Corylus avellana
Haze_11209 Corylus avellana
Haze_14545 Corylus avellana
Haze_26870 Corylus avellana
Hma1.2p1_1572F.1_g291490 Hydrangea macrophylla
HPP92_004328 Vanilla planifolia
HPP92_024843 Vanilla planifolia
HPP92_026615 Vanilla planifolia
Hund12093 Selenicereus undatus
Hund15391 Selenicereus undatus
Lalb_Chr02g0159671 Lupinus albus
Lalb_Chr09g0319991 Lupinus albus
Lj2g0025076 Lotus japonicus
Lj3A731G60 Lonicera japonica
Lj3A731G61 Lonicera japonica
Lj4C412G7 Lonicera japonica
Lj4P259T23 Lonicera japonica
LjContig00408g0012632 Lotus japonicus
Lsat_1_v5_gn_2_68300 Lactuca sativa
Lsat_1_v5_gn_4_29301 Lactuca sativa
Manes.01G090100 Manihot esculenta
Manes.03G175500 Manihot esculenta
Mapoly0052s0044 Marchantia polymorpha
MBI05_g08280_MAGBIO Magnolia biondii
MBI06_g06491_MAGBIO Magnolia biondii
MBI11_g32998_MAGBIO Magnolia biondii
MCO16G401 Micromonas commoda
MD13G1197200 Malus domestica
MD16G1197400 Malus domestica
MD17G1050500 Malus domestica
Medtr3g013660 Medicago truncatula
Medtr3g013680 Medicago truncatula
Medtr4g057095 Medicago truncatula
Medtr5g006660 Medicago truncatula
Medtr6g011800 Medicago truncatula
MELO3C006514.2 Cucumis melo
MELO3C021203.2 Cucumis melo
Migut.D02453 Erythranthe guttata
Migut.D02508 Erythranthe guttata
Migut.N00200 Erythranthe guttata
MSTRG.24731 Avicennia marina
Nitab4.5_0000085g0370 Nicotiana tabacum
Nitab4.5_0001048g0080 Nicotiana tabacum
Nitab4.5_0001547g0040 Nicotiana tabacum
Nitab4.5_0006562g0040 Nicotiana tabacum
Nitab4.5_0011135g0030 Nicotiana tabacum
Nn1g02387 Nelumbo nucifera
Nn4g23144 Nelumbo nucifera
Oeu005234.1 Olea europaea
Oeu010308.1 Olea europaea
Oeu055283.1 Olea europaea
Oeu064759.1 Olea europaea
Os03g0746500 Oryza sativa ssp. japonica
Os04g0459800 Oryza sativa ssp. japonica
Peaxi162Scf00092g00022 Petunia axillaris
Peaxi162Scf00092g00119 Petunia axillaris
Peaxi162Scf00464g00317 Petunia axillaris
PGR129G0015 Punica granatum
PGR142G0615 Punica granatum
PGR142G2346 Punica granatum
PGSC0003DMG400013241 Solanum tuberosum
Phvul.002G043200 Phaseolus vulgaris
Phvul.004G028100 Phaseolus vulgaris
Potri.010G084100 Populus trichocarpa
Potri.017G081900 Populus trichocarpa
Pp3c11_24680 Physcomitrium patens
PRCOL_00000719 Prasinoderma coloniale
Prupe.1G018300 Prunus persica
Prupe.3G268500 Prunus persica
Psat1g074520 Pisum sativum
Psat2g190360 Pisum sativum
PSO063G6920 Papaver somniferum
PSO210G7121 Papaver somniferum
PSO675G8623 Papaver somniferum
PSO832G1866 Papaver somniferum
PSO832G4510 Papaver somniferum
QL01p016137 Quercus lobata
QL02p024732 Quercus lobata
QL06p001588 Quercus lobata
QL06p001595 Quercus lobata
QL11p025200 Quercus lobata
QL12p000968 Quercus lobata
RcHm_v2.0_Chr1g0322241 Rosa chinensis
RcHm_v2.0_Chr1g0322251 Rosa chinensis
RcHm_v2.0_Chr1g0342501 Rosa chinensis
RcHm_v2.0_Chr2g0168661 Rosa chinensis
RcHm_v2.0_Chr3g0487301 Rosa chinensis
RcHm_v2.0_Chr4g0386441 Rosa chinensis
Rhsim02G0027100 Rhododendron simsii
Rhsim10G0180200 Rhododendron simsii
Sabra10G0058900 Salix brachista
Sabra17G0072900 Salix brachista
Sc07g0004540 Simmondsia chinensis
Sc07g0004550 Simmondsia chinensis
Sc13g0004600 Simmondsia chinensis
Sed0002537 Sechium edule
Sed0009300 Sechium edule
SEGI_33056 Sequoiadendron giganteum
SEGI_36430 Sequoiadendron giganteum
SGA_v2.0_scaffold21G09475 Striga asiatica
SGA_v2.0_scaffold79G25580 Striga asiatica
SHI06833 Sapria himalayana
SMO196G0191 Selaginella moellendorffii
SMO356G0765 Selaginella moellendorffii
Solyc11g011460.2 Solanum lycopersicum
Sopen09g031260 Solanum pennellii
Sopen11g006250 Solanum pennellii
Sp7g02220 Schrenkiella parvula
Sp7g12920 Schrenkiella parvula
TAR362G0085 Trochodendron aralioides
TAR622G0591 Trochodendron aralioides
TAR629G2089 Trochodendron aralioides
TAR629G3266 Trochodendron aralioides
THA.LOC104808563 Tarenaya hassleriana
Thecc.04G080400 Theobroma cacao
Thecc.04G235800 Theobroma cacao
Thhalv10025349m.g Eutrema salsugineum
Thhalv10027648m.g Eutrema salsugineum
TPR.G21390 Trifolium pratense
TPR.G3004 Trifolium pratense
TPR.G37883 Trifolium pratense
TWI09G0495 Tripterygium wilfordii
TWI60G0183 Tripterygium wilfordii
unitig_46.g18610 Utricularia gibba
unitig_736.g22345 Utricularia gibba
vmacro15359 Vaccinium macrocarpon
vmacro20586 Vaccinium macrocarpon
VMungo0464G0369 Vigna mungo
VMungo1215G1359 Vigna mungo
Zm00001eb057040 Zea mays
Zm00001eb080820 Zea mays
Zm00001eb424080 Zea mays
Zm00001eb424090 Zea mays
Zm00001eb424100 Zea mays
Zm00001eb424140 Zea mays
Zm00001eb424180 Zea mays
Zm00001eb424200 Zea mays
Zm00001eb424230 Zea mays

User provided reference genes

Program Settings