Gene: PGSC0003DMG400013241
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400013241
- Transcript Identifier PGSC0003DMT400034439
- Gene Type Coding gene
- Location ST4.03ch11 : 1187745-1191351 : negative
Gene Family Information
- ID HOM05D002650
- #Genes/#Species 259/98
- Phylogenetic origin
- ID ORTHO05D002924
- #Genes/#Species 254/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37464286
- id PGSC0003DMG400013241.v4.03
- uniprot M1B0P1
Descriptions
- Description ATP-dependent RNA and DNA helicase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006401 | IBA | GOA Database | RNA catabolic process | |
| GO:0080038 | ISO | PLAZA Integrative Orthology | positive regulation of cytokinin-activated signaling pathway | Os03g0746500 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G14790 |
| GO:0009939 | ISO | PLAZA Integrative Orthology | positive regulation of gibberellic acid mediated signaling pathway | Os03g0746500 |
| GO:1902584 | ISO | PLAZA Integrative Orthology | positive regulation of response to water deprivation | Os03g0746500 |
| GO:1901002 | ISO | PLAZA Integrative Orthology | positive regulation of response to salt stress | Os03g0746500 |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | AT4G14790 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | Os03g0746500 |
| GO:0010929 | ISO | PLAZA Integrative Orthology | positive regulation of auxin mediated signaling pathway | Os03g0746500 |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | AT4G14790 |
| GO:0000965 | IBA | GOA Database | mitochondrial RNA 3'-end processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003678 | ISO | PLAZA Integrative Orthology | DNA helicase activity | Os03g0746500 |
| GO:0016817 | IEA | GOA Database | hydrolase activity, acting on acid anhydrides | |
| GO:0016817 | IEA | InterPro | hydrolase activity, acting on acid anhydrides | |
| GO:0003724 | IBA IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT4G14790 |
| GO:0045025 | IBA | GOA Database | mitochondrial degradosome | |
| GO:0042645 | IEA | GOA Database | mitochondrial nucleoid | |
| GO:0005759 | IEA | GOA Database | mitochondrial matrix |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR041082 | Suv3, C-terminal domain 1 |
| IPR022192 | Mitochondrial degradasome RNA helicase subunit, C-terminal domain |
| IPR044774 | Suv3, DEXQ-box helicase domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |