Gene: AT5G39840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39840
  • Transcript Identifier AT5G39840.1
  • Gene Type Coding gene
  • Location Chr5 : 15946769-15949186 : positive

Gene Family Information

  • ID HOM05D002650
  • #Genes/#Species 259/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39840.1
  • uniprot F4KFV7

Descriptions

  • Description ATP-dependent RNA helicase
  • Computational description ATP-dependent RNA helicase, mitochondrial, putative; FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial (SUV3) (TAIR:AT4G14790.1); Has 4068 Blast hits to 4044 proteins in 754 species: Archae - 43; Bacteria - 1236; Metazoa - 267; Fungi - 388; Plants - 157; Viruses - 16; Other Eukaryotes - 1961 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IBA
Gene OntologyRNA catabolic process1
GO:0000965
IBA
Gene Ontologymitochondrial RNA 3'-end processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016817
IEA
GOA Databasehydrolase activity, acting on acid anhydrides
GO:0016817
IEA
InterProhydrolase activity, acting on acid anhydrides
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IBA
Gene OntologyRNA helicase activity1
GO:0003724
IEA
InterProRNA helicase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005634
IEA
GOA Databasenucleus
GO:0042645
IEA
GOA Databasemitochondrial nucleoid
GO:0005759
IEA
GOA Databasemitochondrial matrix
GO:0045025
IBA
Gene Ontologymitochondrial degradosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR044774 Suv3, DEXQ-box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR041082 Suv3, C-terminal domain 1
IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain
Mapman id Description
35.1 not assigned.annotated