Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34620 Brassica napus
A05p41740 Brassica napus
A07p22090 Brassica napus
Aa31LG5G16810 Aethionema arabicum
Aa31LG7G14280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4812 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis
Actinidia23455 Actinidia chinensis
Actinidia23456 Actinidia chinensis
Actinidia23457 Actinidia chinensis
Actinidia40212 Actinidia chinensis
Ah.02g112310 Amaranthus hybridus
Ah.10g031030 Amaranthus hybridus
Ah.15g098080 Amaranthus hybridus
AL3G17180 Arabidopsis lyrata
AL5G35430 Arabidopsis lyrata
Aqoxy2G03189 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5CZ66Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5YBJ8N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DAH8ZN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQYE38 Arachis hypogaea
AT3G06290 Arabidopsis thaliana
AT3G54380 Arabidopsis thaliana
ATR0626G271 Amborella trichopoda
ATR0782G079 Amborella trichopoda
Atru.chr12.1192 Acer truncatum
Atru.chr4.2699 Acer truncatum
Atru.chr4.2700 Acer truncatum
AUR62011813 Chenopodium quinoa
AUR62024657 Chenopodium quinoa
AUR62035526 Chenopodium quinoa
AUR62041643 Chenopodium quinoa
AUR62041649 Chenopodium quinoa
BcaB02g07738 Brassica carinata
BcaB03g14660 Brassica carinata
BcaB03g14661 Brassica carinata
BcaB03g14662 Brassica carinata
BcaB03g14668 Brassica carinata
BcaC05g29801 Brassica carinata
BcaC05g30040 Brassica carinata
BcaC05g30043 Brassica carinata
BcaC08g44680 Brassica carinata
BolC3t16488H Brassica oleracea
BolC5t34752H Brassica oleracea
BolC5t34753H Brassica oleracea
BolC6t37400H Brassica oleracea
BraA03t12638Z Brassica rapa
BraA05t22893Z Brassica rapa
BraA07t29892Z Brassica rapa
C03p42080 Brassica napus
C05p60970 Brassica napus
C05p60980 Brassica napus
C06p22130 Brassica napus
CAN.G201.21 Capsicum annuum
CAN.G290.14 Capsicum annuum
CANSAT78G1223 Cannabis sativa
CARHR080780 Cardamine hirsuta
CARHR164280 Cardamine hirsuta
CARHR164290 Cardamine hirsuta
CARHR164800 Cardamine hirsuta
Carub.0003s0571 Capsella rubella
Carub.0005s2097 Capsella rubella
Ca_00589_v3 Cicer arietinum L.
Ca_00591_v3 Cicer arietinum L.
Ca_24050_v3 Cicer arietinum L.
Ca_30832_v3 Cicer arietinum L.
CBR_g52314 Chara braunii
Cc01_g13120 Coffea canephora
Cc03_g02770 Coffea canephora
CDE04G1894 Ceratophyllum demersum
CDE04G2572 Ceratophyllum demersum
Cfa010978 Carpinus fangiana
Cfa015542 Carpinus fangiana
Cfa024664 Carpinus fangiana
Ciclev10002050m.g Citrus clementina
Ciclev10004135m.g Citrus clementina
CiPaw.02G089600 Carya illinoinensis
CiPaw.13G122700 Carya illinoinensis
ClCG05G005560 Citrullus lanatus
ClCG11G012900 Citrullus lanatus
COL.COLO4_10243 Corchorus olitorius
COL.COLO4_13973 Corchorus olitorius
Cpa.g.sc16.69 Carica papaya
Cpa.g.sc33.154 Carica papaya
Cre02.g143600 Chlamydomonas reinhardtii
CsaV3_3G013900 Cucumis sativus L.
CsaV3_5G029320 Cucumis sativus L.
CSS0005255 Camellia sinensis var. sinensis
CSS0010980 Camellia sinensis var. sinensis
CSS0019247 Camellia sinensis var. sinensis
CSS0038359 Camellia sinensis var. sinensis
CSS0040455 Camellia sinensis var. sinensis
DCAR_027134 Daucus carota
Dinv23932 Davidia involucrata
Dinv38353 Davidia involucrata
Dinv44457 Davidia involucrata
Duzib114G0378 Durio zibethinus
Duzib212G0707 Durio zibethinus
ECA233G5784 Erigeron canadensis
ECA247G0765 Erigeron canadensis
EL10Ac4g08839 Beta vulgaris
EL10As5g23527 Beta vulgaris
Eucgr.G03187 Eucalyptus grandis
Eucgr.H03640 Eucalyptus grandis
FAN01G2798 Fragaria x ananassa
FAN03G2619 Fragaria x ananassa
FAN06G4716 Fragaria x ananassa
FAN12G0871 Fragaria x ananassa
FAN17G1311 Fragaria x ananassa
FAN22G2205 Fragaria x ananassa
FvH4_4g13920 Fragaria vesca
FvH4_7g04370 Fragaria vesca
Glyma.13G187800 Glycine max
Glyma.13G211900 Glycine max
Glyma.15G100800 Glycine max
Glyma.15G225932 Glycine max
Gohir.A06G172400 Gossypium hirsutum
Gohir.A09G232000 Gossypium hirsutum
Gohir.D06G181200 Gossypium hirsutum
Gohir.D09G233100 Gossypium hirsutum
Gorai.006G256000 Gossypium raimondii
Gorai.010G212700 Gossypium raimondii
GSVIVG01004011001 Vitis vinifera
GSVIVG01004016001 Vitis vinifera
GSVIVG01004025001 Vitis vinifera
GSVIVG01012401001 Vitis vinifera
GSVIVG01012412001 Vitis vinifera
GSVIVG01012414001 Vitis vinifera
GSVIVG01012427001 Vitis vinifera
GSVIVG01012432001 Vitis vinifera
GSVIVG01012439001 Vitis vinifera
GSVIVG01017853001 Vitis vinifera
GSVIVG01026103001 Vitis vinifera
HanXRQChr04g0101361 Helianthus annuus
HanXRQChr09g0251551 Helianthus annuus
Haze_01007 Corylus avellana
Haze_02959 Corylus avellana
Hma1.2p1_0233F.1_g098280 Hydrangea macrophylla
Hma1.2p1_0233F.1_g098290 Hydrangea macrophylla
HPP92_013653 Vanilla planifolia
HPP92_013654 Vanilla planifolia
HPP92_013671 Vanilla planifolia
HPP92_013672 Vanilla planifolia
HPP92_014254 Vanilla planifolia
Hund06846 Selenicereus undatus
Hund09628 Selenicereus undatus
Lalb_Chr01g0007531 Lupinus albus
Lalb_Chr15g0087191 Lupinus albus
Lj6C665T16 Lonicera japonica
Lj6g0008158 Lotus japonicus
Lj9C652G3 Lonicera japonica
LjContig00430g0021063 Lotus japonicus
Lsat_1_v5_gn_1_27380 Lactuca sativa
Lsat_1_v5_gn_6_69301 Lactuca sativa
Manes.03G187900 Manihot esculenta
Manes.11G009700 Manihot esculenta
Mapoly0096s0011 Marchantia polymorpha
Mapoly0144s0009 Marchantia polymorpha
MBI13_g02376_MAGBIO Magnolia biondii
MCO13G010 Micromonas commoda
MD02G1270900 Malus domestica
MD13G1178300 Malus domestica
MD13G1178600 Malus domestica
MD16G1179700 Malus domestica
MD16G1179800 Malus domestica
Medtr2g020960 Medicago truncatula
Medtr8g042200 Medicago truncatula
Medtr8g042380 Medicago truncatula
MELO3C006582.2 Cucumis melo
MELO3C011781.2 Cucumis melo
Migut.G00239 Erythranthe guttata
Migut.G00286 Erythranthe guttata
Migut.N01869 Erythranthe guttata
MSTRG.3973 Avicennia marina
MSTRG.5083 Avicennia marina
Nitab4.5_0000010g0140 Nicotiana tabacum
Nitab4.5_0000256g0430 Nicotiana tabacum
Nitab4.5_0001505g0010 Nicotiana tabacum
Nitab4.5_0006066g0010 Nicotiana tabacum
Nitab4.5_0020524g0010 Nicotiana tabacum
Nn3g21175 Nelumbo nucifera
Nn7g37051 Nelumbo nucifera
Oeu014616.1 Olea europaea
Oeu032696.1 Olea europaea
Os03g0352200 Oryza sativa ssp. japonica
Os07g0646000 Oryza sativa ssp. japonica
Peaxi162Scf00592g00111 Petunia axillaris
Peaxi162Scf00592g00112 Petunia axillaris
Peaxi162Scf00615g00312 Petunia axillaris
PGR004G0605 Punica granatum
PGSC0003DMG401002094 Solanum tuberosum
Phvul.006G158000 Phaseolus vulgaris
Phvul.011G192000 Phaseolus vulgaris
Potri.001G035700 Populus trichocarpa
Potri.010G028200 Populus trichocarpa
Pp3c19_5190 Physcomitrium patens
Pp3c21_2030 Physcomitrium patens
Pp3c3_29590 Physcomitrium patens
PRCOL_00005549 Prasinoderma coloniale
Prupe.1G147400 Prunus persica
Prupe.2G049500 Prunus persica
Psat1g185440 Pisum sativum
Psat4g010920 Pisum sativum
Psat4g189000 Pisum sativum
PSO170G5860 Papaver somniferum
PSO302G0174 Papaver somniferum
PSO339G2887 Papaver somniferum
PSO384G1419 Papaver somniferum
QL04p022463 Quercus lobata
RcHm_v2.0_Chr1g0329461 Rosa chinensis
RcHm_v2.0_Chr4g0419781 Rosa chinensis
Rhsim04G0212900 Rhododendron simsii
Rhsim07G0071700 Rhododendron simsii
Sabra10G0012600 Salix brachista
SalBow2G0767 Salvia bowleyana
Sc06g0002980 Simmondsia chinensis
Sc13g0003790 Simmondsia chinensis
Sed0003410 Sechium edule
Sed0010214 Sechium edule
SEGI_28422 Sequoiadendron giganteum
SEGI_35646 Sequoiadendron giganteum
SEGI_35930 Sequoiadendron giganteum
SGA_v2.0_scaffold232G43474 Striga asiatica
SGA_v2.0_scaffold237G43852 Striga asiatica
SHI00347 Sapria himalayana
SMO356G0266 Selaginella moellendorffii
SMO364G0447 Selaginella moellendorffii
Solyc06g061120.4 Solanum lycopersicum
Solyc12g035670.3 Solanum lycopersicum
Sopen06g021320 Solanum pennellii
Sopen12g016080 Solanum pennellii
Sp3g05200 Schrenkiella parvula
Sp5g08030 Schrenkiella parvula
TAR365G0297 Trochodendron aralioides
TAR633G0833 Trochodendron aralioides
THA.LOC104818830 Tarenaya hassleriana
THA.LOC104824197 Tarenaya hassleriana
Thecc.04G272000 Theobroma cacao
Thecc.10G133600 Theobroma cacao
Thhalv10010422m.g Eutrema salsugineum
Thhalv10019892m.g Eutrema salsugineum
TPR.G11063 Trifolium pratense
TPR.G14187 Trifolium pratense
TPR.G16366 Trifolium pratense
TPR.G18023 Trifolium pratense
TWI09G0743 Tripterygium wilfordii
TWI38G0573 Tripterygium wilfordii
unitig_26.g9493 Utricularia gibba
unitig_748.g8564 Utricularia gibba
vmacro08242 Vaccinium macrocarpon
vmacro13780 Vaccinium macrocarpon
VMungo0540G1417 Vigna mungo
VMungo1127G0396 Vigna mungo
Zm00001eb094440 Zea mays
Zm00001eb094450 Zea mays
Zm00001eb160540 Zea mays
Zm00001eb171280 Zea mays
Zm00001eb302530 Zea mays
Zm00001eb302540 Zea mays
Zm00001eb326270 Zea mays
Zm00001eb329290 Zea mays
Zm00001eb329300 Zea mays
Zm00001eb329310 Zea mays
Zm00001eb329320 Zea mays
Zm00001eb329330 Zea mays
Zm00001eb329340 Zea mays
Zm00001eb329350 Zea mays
Zm00001eb381560 Zea mays
Zm00001eb389080 Zea mays
Zm00001eb394650 Zea mays

User provided reference genes

Program Settings