Gene: AT3G06290

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G06290
  • Transcript Identifier AT3G06290.2
  • Gene Type Coding gene
  • Location Chr3 : 1899123-1907297 : negative

Gene Family Information

  • ID HOM05D002494
  • #Genes/#Species 273/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G06290.2
  • symbol SAC3B
  • Alias AtSAC3B
  • full_name yeast Sac3 homolog B
  • uniprot F4JAU2

Descriptions

  • Description SAC3/GANP/Nin1/mts3/eIF-3 p25 family
  • Computational description SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044030
IMP
Gene Ontologyregulation of DNA methylation1
GO:0060968
IMP
Gene Ontologyregulation of gene silencing1
GO:0090065
IMP
Gene Ontologyregulation of production of siRNA involved in RNA interference1
GO:0006406
IBA
Gene OntologymRNA export from nucleus2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0034399
IDA
Gene Ontologynuclear periphery3
GO:0005737
IBA
Gene Ontologycytoplasm2
GO:0070390
IBA
Gene Ontologytranscription export complex 22

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005062 SAC3/GANP/THP3, conserved domain
IPR031907 Germinal-centre associated nuclear protein, MCM3AP domain
IPR045107 SAC3/GANP/THP3
Mapman id Description
16.10.2.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX-2 mRNP trafficking complex.scaffold component GANP/SAC3