Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21210 Brassica napus
A06p45860 Brassica napus
A08p12230 Brassica napus
Aa31LG2G12450 Aethionema arabicum
Aa31LG9G6320 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2543 Anthoceros agrestis
Actinidia02289 Actinidia chinensis
Actinidia09222 Actinidia chinensis
Actinidia09223 Actinidia chinensis
Ah.09g233970 Amaranthus hybridus
Ah.12g054630 Amaranthus hybridus
AL7G38630 Arabidopsis lyrata
AL8G11770 Arabidopsis lyrata
Aqoxy1G04248 Aquilegia oxysepala
Aqoxy3G02461 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1J8J0J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BFSH12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CBN6LR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CEH98S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CTR9JW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DKXM8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GXPN7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R85NMH Arachis hypogaea
AT4G16390 Arabidopsis thaliana
AT5G46580 Arabidopsis thaliana
ATR0049G008 Amborella trichopoda
ATR0049G080 Amborella trichopoda
ATR0827G159 Amborella trichopoda
Atru.chr1.2294 Acer truncatum
Atru.chr6.1755 Acer truncatum
AUR62007250 Chenopodium quinoa
AUR62012838 Chenopodium quinoa
AUR62018748 Chenopodium quinoa
AUR62021821 Chenopodium quinoa
BcaC06g31465 Brassica carinata
BcaC06g34370 Brassica carinata
BcaC07g37983 Brassica carinata
BcaC09g50337 Brassica carinata
BcaNung00201 Brassica carinata
BolC1t02595H Brassica oleracea
BolC7t43530H Brassica oleracea
BolC8t48364H Brassica oleracea
BraA01t02031Z Brassica rapa
BraA06t27453Z Brassica rapa
BraA08t33235Z Brassica rapa
C01p26510 Brassica napus
C07p29780 Brassica napus
CAN.G1156.10 Capsicum annuum
CAN.G1362.17 Capsicum annuum
CAN.G1986.8 Capsicum annuum
CANSAT21G1089 Cannabis sativa
CANSAT56G2213 Cannabis sativa
CARHR175000 Cardamine hirsuta
CARHR222760 Cardamine hirsuta
Carub.0007s2514 Capsella rubella
Carub.0008s0133 Capsella rubella
Ca_00754_v3 Cicer arietinum L.
Ca_00755_v3 Cicer arietinum L.
Ca_00756_v3 Cicer arietinum L.
Ca_21003_v3 Cicer arietinum L.
Ca_22060_v3 Cicer arietinum L.
Cc07_g18180 Coffea canephora
Cc08_g02420 Coffea canephora
Cc09_g00480 Coffea canephora
CDE02G1169 Ceratophyllum demersum
CDE02G3014 Ceratophyllum demersum
CDE05G1508 Ceratophyllum demersum
CDE11G0761 Ceratophyllum demersum
Cfa000046 Carpinus fangiana
Cfa012410 Carpinus fangiana
Ciclev10014469m.g Citrus clementina
Ciclev10033739m.g Citrus clementina
CiPaw.09G107900 Carya illinoinensis
CiPaw.11G091000 Carya illinoinensis
ClCG01G010980 Citrullus lanatus
ClCG10G001810 Citrullus lanatus
COL.COLO4_17074 Corchorus olitorius
COL.COLO4_31927 Corchorus olitorius
Cpa.g.sc27.242 Carica papaya
Cpa.g.sc27.243 Carica papaya
Cpa.g.sc90.56 Carica papaya
CsaV3_1G015490 Cucumis sativus L.
CsaV3_3G001900 Cucumis sativus L.
CSS0010532 Camellia sinensis var. sinensis
CSS0012721 Camellia sinensis var. sinensis
CSS0013338 Camellia sinensis var. sinensis
CSS0020939 Camellia sinensis var. sinensis
DCAR_027929 Daucus carota
DCAR_028407 Daucus carota
DCAR_032210 Daucus carota
Dinv15359 Davidia involucrata
Dinv28931 Davidia involucrata
Duzib192G0948 Durio zibethinus
Duzib205G1470 Durio zibethinus
Duzib235G0088 Durio zibethinus
ECA234G4457 Erigeron canadensis
ECA236G2757 Erigeron canadensis
EL10Ac5g12167 Beta vulgaris
EL10Ac8g20253 Beta vulgaris
Eucgr.E00302 Eucalyptus grandis
Eucgr.E03880 Eucalyptus grandis
FAN04G0996 Fragaria x ananassa
FAN08G2986 Fragaria x ananassa
FAN13G1043 Fragaria x ananassa
FAN18G0399 Fragaria x ananassa
FAN21G3814 Fragaria x ananassa
FAN22G1655 Fragaria x ananassa
FAN25G0761 Fragaria x ananassa
FAN25G1760 Fragaria x ananassa
FvH4_3g00440 Fragaria vesca
FvH4_3g00442 Fragaria vesca
FvH4_3g00470 Fragaria vesca
FvH4_5g21640 Fragaria vesca
Glyma.05G113300 Glycine max
Glyma.07G267500 Glycine max
Glyma.09G013300 Glycine max
Glyma.09G013400 Glycine max
Glyma.09G013500 Glycine max
Glyma.09G013600 Glycine max
Glyma.15G118100 Glycine max
Glyma.15G118200 Glycine max
Glyma.15G118300 Glycine max
Glyma.17G006500 Glycine max
Glyma.17G153900 Glycine max
Gohir.A06G204400 Gossypium hirsutum
Gohir.A11G030000 Gossypium hirsutum
Gohir.A12G209600 Gossypium hirsutum
Gohir.D06G217100 Gossypium hirsutum
Gohir.D11G028500 Gossypium hirsutum
Gohir.D11G028600 Gossypium hirsutum
Gohir.D12G212300 Gossypium hirsutum
Gorai.007G031200 Gossypium raimondii
Gorai.008G227900 Gossypium raimondii
Gorai.010G249100 Gossypium raimondii
GSVIVG01003493001 Vitis vinifera
GSVIVG01003496001 Vitis vinifera
HanXRQChr03g0091621 Helianthus annuus
HanXRQChr13g0397421 Helianthus annuus
HanXRQChr15g0480141 Helianthus annuus
HanXRQChr16g0516391 Helianthus annuus
HanXRQChr17g0550821 Helianthus annuus
HanXRQChr17g0558121 Helianthus annuus
Haze_07007 Corylus avellana
Haze_08268 Corylus avellana
Hma1.2p1_0585F.1_g183590 Hydrangea macrophylla
Hma1.2p1_1963F.1_g309320 Hydrangea macrophylla
HPP92_007731 Vanilla planifolia
HPP92_014569 Vanilla planifolia
HPP92_014589 Vanilla planifolia
Lalb_Chr05g0220581 Lupinus albus
Lalb_Chr13g0304341 Lupinus albus
Lalb_Chr15g0088161 Lupinus albus
Lalb_Chr15g0088171 Lupinus albus
Lj1P1185T58 Lonicera japonica
Lj1P1246T17 Lonicera japonica
Lj4g0012916 Lotus japonicus
Lj4g0014160 Lotus japonicus
Lj6g0009459 Lotus japonicus
Lj6g0010986 Lotus japonicus
Lsat_1_v5_gn_4_63581 Lactuca sativa
Lsat_1_v5_gn_7_30220 Lactuca sativa
Manes.08G070000 Manihot esculenta
Manes.10G107700 Manihot esculenta
Manes.17G013500 Manihot esculenta
Mapoly0036s0094 Marchantia polymorpha
MBI04_g22956_MAGBIO Magnolia biondii
MBI16_g07771_MAGBIO Magnolia biondii
MD00G1221000 Malus domestica
MD05G1360400 Malus domestica
MD06G1031400 Malus domestica
MD08G1234300 Malus domestica
MD10G1337400 Malus domestica
MD10G1337600 Malus domestica
MD10G1337800 Malus domestica
MD10G1338000 Malus domestica
MD16G1277300 Malus domestica
Medtr2g026600 Medicago truncatula
Medtr2g026635 Medicago truncatula
Medtr2g026645 Medicago truncatula
Medtr4g098660 Medicago truncatula
Medtr4g133740 Medicago truncatula
MELO3C013863.2 Cucumis melo
MELO3C026075.2 Cucumis melo
Migut.E01130 Erythranthe guttata
Migut.G00781 Erythranthe guttata
Migut.H01625 Erythranthe guttata
Migut.I00316 Erythranthe guttata
Migut.J00730 Erythranthe guttata
MSTRG.12006 Avicennia marina
Nitab4.5_0000049g0180 Nicotiana tabacum
Nitab4.5_0001668g0100 Nicotiana tabacum
Nitab4.5_0001668g0140 Nicotiana tabacum
Nitab4.5_0001668g0180 Nicotiana tabacum
Nitab4.5_0002931g0010 Nicotiana tabacum
Nn1g00578 Nelumbo nucifera
Oeu047044.1 Olea europaea
Oeu047045.1 Olea europaea
Oeu052843.2 Olea europaea
Oeu053062.1 Olea europaea
Os03g0215900 Oryza sativa ssp. japonica
Os03g0856100 Oryza sativa ssp. japonica
Peaxi162Scf00008g00025 Petunia axillaris
Peaxi162Scf00695g00042 Petunia axillaris
PGR042G1705 Punica granatum
PGR042G3232 Punica granatum
PGSC0003DMG400013362 Solanum tuberosum
PGSC0003DMG400035484 Solanum tuberosum
PGSC0003DMG402017504 Solanum tuberosum
Phvul.003G086100 Phaseolus vulgaris
Phvul.003G229500 Phaseolus vulgaris
Phvul.006G140000 Phaseolus vulgaris
Phvul.006G140100 Phaseolus vulgaris
Potri.003G089600 Populus trichocarpa
Potri.006G018600 Populus trichocarpa
Potri.006G019000 Populus trichocarpa
Potri.016G006800 Populus trichocarpa
Pp3c15_12010 Physcomitrium patens
Pp3c9_6880 Physcomitrium patens
Prupe.4G005200 Prunus persica
Prupe.5G040700 Prunus persica
Psat0s4444g0040 Pisum sativum
Psat1g174360 Pisum sativum
Psat1g174440 Pisum sativum
Psat1g174480 Pisum sativum
Psat4g002160 Pisum sativum
Psat4g078640 Pisum sativum
PSO063G7100 Papaver somniferum
PSO210G3509 Papaver somniferum
PSO302G0128 Papaver somniferum
PSO541G5028 Papaver somniferum
PSO782G2150 Papaver somniferum
QL04p094477 Quercus lobata
QL05p068130 Quercus lobata
QL11p017600 Quercus lobata
QL12p006241 Quercus lobata
QL12p006246 Quercus lobata
RcHm_v2.0_Chr5g0000631 Rosa chinensis
RcHm_v2.0_Chr7g0209101 Rosa chinensis
Rhsim07G0124600 Rhododendron simsii
Rhsim13G0142000 Rhododendron simsii
Sabra03G0059400 Salix brachista
Sabra06G0013300 Salix brachista
Sabra16G0011600 Salix brachista
SalBow1G4884 Salvia bowleyana
SalBow1G5806 Salvia bowleyana
SalBow4G1776 Salvia bowleyana
Sc05g0009800 Simmondsia chinensis
Sc07g0008770 Simmondsia chinensis
Sed0011173 Sechium edule
Sed0013425 Sechium edule
Sed0027917 Sechium edule
SEGI_06089 Sequoiadendron giganteum
SEGI_15901 Sequoiadendron giganteum
SEGI_18519 Sequoiadendron giganteum
SEGI_38118 Sequoiadendron giganteum
SEGI_38795 Sequoiadendron giganteum
SEGI_39585 Sequoiadendron giganteum
SGA_v2.0_scaffold161G37775 Striga asiatica
SGA_v2.0_scaffold385G50461 Striga asiatica
SGA_v2.0_scaffold49G18233 Striga asiatica
SGA_v2.0_scaffold89G27531 Striga asiatica
SMO141G0218 Selaginella moellendorffii
SMO146G0314 Selaginella moellendorffii
Solyc08g077120.2 Solanum lycopersicum
Solyc08g077140.1 Solanum lycopersicum
Solyc09g042290.3 Solanum lycopersicum
Solyc11g012670.1 Solanum lycopersicum
Sopen08g025700 Solanum pennellii
Sopen11g007400 Solanum pennellii
Sp2g11410 Schrenkiella parvula
Sp7g14910 Schrenkiella parvula
TAR626G0509 Trochodendron aralioides
TAR636G3549 Trochodendron aralioides
THA.LOC104806104 Tarenaya hassleriana
THA.LOC104815477 Tarenaya hassleriana
Thecc.03G231100 Theobroma cacao
Thecc.06G238800 Theobroma cacao
Thecc.06G239300 Theobroma cacao
Thhalv10000815m.g Eutrema salsugineum
Thhalv10024562m.g Eutrema salsugineum
TPR.G10561 Trifolium pratense
TPR.G10585 Trifolium pratense
TPR.G10591 Trifolium pratense
TPR.G10592 Trifolium pratense
TPR.G22149 Trifolium pratense
TPR.G28660 Trifolium pratense
TPR.G29269 Trifolium pratense
TPR.G30217 Trifolium pratense
TPR.G36060 Trifolium pratense
TPR.G5930 Trifolium pratense
TWI60G1708 Tripterygium wilfordii
TWI63G1199 Tripterygium wilfordii
unitig_37.g12575 Utricularia gibba
VMungo0251G3088 Vigna mungo
VMungo0540G1149 Vigna mungo
VMungo0540G1298 Vigna mungo
VMungo0540G1537 Vigna mungo
VMungo1215G0876 Vigna mungo
Zm00001eb008730 Zea mays
Zm00001eb064910 Zea mays

User provided reference genes

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