Gene: AT5G46580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G46580
  • Transcript Identifier AT5G46580.1
  • Gene Type Coding gene
  • Location Chr5 : 18897510-18899645 : negative

Gene Family Information

  • ID HOM05D002244
  • #Genes/#Species 300/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G46580.1
  • uniprot Q9LS25

Descriptions

  • Description pentatricopeptide (PPR) repeat-containing protein
  • Computational description pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G16390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast1
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
Mapman id Description
16.11.5.8 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial rRNA processing factor (SOT1)