Gene: AT4G16390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G16390
  • Transcript Identifier AT4G16390.1
  • Gene Type Coding gene
  • Location Chr4 : 9257985-9260093 : positive

Gene Family Information

  • ID HOM05D002244
  • #Genes/#Species 300/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G16390.1
  • symbol SVR7
  • full_name suppressor of variegation 7
  • uniprot Q8GWE0

Descriptions

  • Description pentatricopeptide (PPR) repeat-containing protein
  • Computational description pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46580.1); Has 17747 Blast hits to 5579 proteins in 105 species: Archae - 0; Bacteria - 25; Metazoa - 20; Fungi - 137; Plants - 17077; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0031425
IMP
Gene Ontologychloroplast RNA processing2
GO:0045727
IMP
Gene Ontologypositive regulation of translation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM, IBA
Gene Ontologychloroplast1 5 6
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma7
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR002625 Smr domain
IPR033443 Pentacotripeptide-repeat region of PRORP
Mapman id Description
16.11.5.9 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial RNA processing factor (SVR7)