Gene: Sopen11g007400

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g007400
  • Transcript Identifier Sopen11g007400.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 5503806-5505875 : negative

Gene Family Information

  • ID HOM05D002244
  • #Genes/#Species 300/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g007400.1

Descriptions

  • Description pentatricopeptide (PPR) repeat-containing protein | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Smr protein/MutS2 C-terminal | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045727
ISO
PLAZA Integrative Orthologypositive regulation of translation Zm00001eb008730
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT4G16390
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT4G16390

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding Zm00001eb008730

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb008730
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G16390

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR033443 Pentacotripeptide-repeat region of PRORP
IPR002625 Smr domain
Mapman id Description
16.11.5.9 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial RNA processing factor (SVR7)