Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p21480 Brassica napus
A09p11420 Brassica napus
Aa31LG4G7790 Aethionema arabicum
Aa31LG8G14800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_196.1 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2182 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2946 Anthoceros agrestis
Actinidia03490 Actinidia chinensis
Actinidia17335 Actinidia chinensis
Actinidia22888 Actinidia chinensis
Actinidia25671 Actinidia chinensis
Actinidia29453 Actinidia chinensis
Ah.16g110130 Amaranthus hybridus
AL2G37890 Arabidopsis lyrata
AL3G50440 Arabidopsis lyrata
Aqoxy5G01889 Aquilegia oxysepala
Aqoxy6G01571 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K9S7A3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WDY3M6 Arachis hypogaea
AT1G77680 Arabidopsis thaliana
AT2G17510 Arabidopsis thaliana
ATR0118G017 Amborella trichopoda
ATR0807G141 Amborella trichopoda
Atru.chr13.1405 Acer truncatum
Atru.chr3.27 Acer truncatum
AUR62003736 Chenopodium quinoa
AUR62016565 Chenopodium quinoa
AUR62023366 Chenopodium quinoa
AUR62023635 Chenopodium quinoa
BcaB03g16519 Brassica carinata
BcaB05g25066 Brassica carinata
BcaB07g31725 Brassica carinata
BcaC03g15759 Brassica carinata
BcaC04g22967 Brassica carinata
BcaNung02375 Brassica carinata
BcaNung04615 Brassica carinata
BolC7t46522H Brassica oleracea
BolC7t46523H Brassica oleracea
BolC9t54234H Brassica oleracea
BraA02t07171Z Brassica rapa
BraA09t36782Z Brassica rapa
C02p34960 Brassica napus
C07p60960 Brassica napus
C07p60970 Brassica napus
C09p13440 Brassica napus
CAN.G1238.30 Capsicum annuum
CAN.G2.38 Capsicum annuum
CANSAT25G3401 Cannabis sativa
CANSAT64G0090 Cannabis sativa
CARHR071180 Cardamine hirsuta
CARHR071190 Cardamine hirsuta
CARHR107670 Cardamine hirsuta
Carub.0002s2456 Capsella rubella
Carub.0003s3157 Capsella rubella
Ca_02844_v3 Cicer arietinum L.
Ca_03727_v3 Cicer arietinum L.
Ca_22554_v3 Cicer arietinum L.
CBR_g18654 Chara braunii
CBR_g18659 Chara braunii
CBR_g18665 Chara braunii
CBR_g3977 Chara braunii
CBR_g8384 Chara braunii
Cc07_g12000 Coffea canephora
Cc10_g11030 Coffea canephora
CDE06G1921 Ceratophyllum demersum
CDE10G0831 Ceratophyllum demersum
Cfa007098 Carpinus fangiana
Cfa013486 Carpinus fangiana
Cfa015986 Carpinus fangiana
Cfa024479 Carpinus fangiana
Cfa025726 Carpinus fangiana
Cfa026177 Carpinus fangiana
Ciclev10000093m.g Citrus clementina
Ciclev10024818m.g Citrus clementina
CiPaw.05G224900 Carya illinoinensis
CiPaw.07G001100 Carya illinoinensis
ClCG02G005730 Citrullus lanatus
ClCG08G005400 Citrullus lanatus
COL.COLO4_12189 Corchorus olitorius
COL.COLO4_22562 Corchorus olitorius
Cpa.g.sc36.27 Carica papaya
Cpa.g.sc6.358 Carica papaya
Cre03.g208100 Chlamydomonas reinhardtii
Cre12.g507250 Chlamydomonas reinhardtii
Cre14.g613850 Chlamydomonas reinhardtii
CsaV3_3G005680 Cucumis sativus L.
CsaV3_6G003580 Cucumis sativus L.
CsaV3_7G008800 Cucumis sativus L.
CSS0002228 Camellia sinensis var. sinensis
CSS0003804 Camellia sinensis var. sinensis
CSS0008574 Camellia sinensis var. sinensis
CSS0010638 Camellia sinensis var. sinensis
CSS0014084 Camellia sinensis var. sinensis
CSS0014674 Camellia sinensis var. sinensis
CSS0017896 Camellia sinensis var. sinensis
CSS0019965 Camellia sinensis var. sinensis
CSS0020512 Camellia sinensis var. sinensis
CSS0021720 Camellia sinensis var. sinensis
CSS0040242 Camellia sinensis var. sinensis
DCAR_014108 Daucus carota
DCAR_017392 Daucus carota
DCAR_018080 Daucus carota
DCAR_019080 Daucus carota
Dinv27341 Davidia involucrata
Dinv28311 Davidia involucrata
Dinv40201 Davidia involucrata
Duzib041G0044 Durio zibethinus
Duzib116G0213 Durio zibethinus
Duzib147G0840 Durio zibethinus
ECA238G3790 Erigeron canadensis
ECA246G1773 Erigeron canadensis
EL10Ac1g00012 Beta vulgaris
EL10Ac6g15040 Beta vulgaris
Eucgr.F03766 Eucalyptus grandis
Eucgr.J00205 Eucalyptus grandis
FAN01G1564 Fragaria x ananassa
FAN06G1171 Fragaria x ananassa
FAN15G1193 Fragaria x ananassa
FAN19G1591 Fragaria x ananassa
FAN20G0685 Fragaria x ananassa
FAN23G0161 Fragaria x ananassa
FAN23G2634 Fragaria x ananassa
FAN24G2028 Fragaria x ananassa
FAN26G1091 Fragaria x ananassa
FAN27G0108 Fragaria x ananassa
FAN28G2624 Fragaria x ananassa
FvH4_1g10170 Fragaria vesca
FvH4_2g26510 Fragaria vesca
FvH4_7g18421 Fragaria vesca
Glyma.04G221900 Glycine max
Glyma.06G143500 Glycine max
Glyma.12G218100 Glycine max
Glyma.13G082100 Glycine max
Glyma.14G163000 Glycine max
Gohir.A05G233200 Gossypium hirsutum
Gohir.A07G171800 Gossypium hirsutum
Gohir.D05G235600 Gossypium hirsutum
Gohir.D07G178500 Gossypium hirsutum
Gorai.001G199700 Gossypium raimondii
Gorai.009G243900 Gossypium raimondii
GSVIVG01008904001 Vitis vinifera
GSVIVG01022300001 Vitis vinifera
HanXRQChr08g0229271 Helianthus annuus
HanXRQChr14g0443111 Helianthus annuus
Haze_00483 Corylus avellana
Haze_03631 Corylus avellana
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla
HPP92_010129 Vanilla planifolia
HPP92_021382 Vanilla planifolia
Hund19690 Selenicereus undatus
Hund20425 Selenicereus undatus
Hund27040 Selenicereus undatus
Lalb_Chr10g0097551 Lupinus albus
Lalb_Chr10g0101931 Lupinus albus
Lalb_Chr17g0343881 Lupinus albus
Lj1g0016472 Lotus japonicus
Lj4A238G77 Lonicera japonica
Lj4A238T76 Lonicera japonica
Lj4A611G30 Lonicera japonica
Lj4A612G15 Lonicera japonica
Lj4A612G16 Lonicera japonica
Lj4A612T12 Lonicera japonica
Lj4g0016756 Lotus japonicus
Lsat_1_v5_gn_2_73920 Lactuca sativa
Lsat_1_v5_gn_3_69361 Lactuca sativa
Lsat_1_v5_gn_6_111060 Lactuca sativa
Manes.01G156500 Manihot esculenta
Manes.18G075000 Manihot esculenta
Mapoly0010s0091 Marchantia polymorpha
Mapoly0058s0075 Marchantia polymorpha
Mapoly0081s0047 Marchantia polymorpha
Mapoly0140s0030 Marchantia polymorpha
MBI02_g08719_MAGBIO Magnolia biondii
MCO02G146 Micromonas commoda
MCO05G187 Micromonas commoda
MCO06G072 Micromonas commoda
MD02G1113900 Malus domestica
MD08G1168200 Malus domestica
MD15G1229000 Malus domestica
MD15G1353600 Malus domestica
Medtr5g058810 Medicago truncatula
Medtr5g059080 Medicago truncatula
Medtr6g049200 Medicago truncatula
Medtr8g073170 Medicago truncatula
MELO3C011578.2 Cucumis melo
MELO3C018432.2 Cucumis melo
MELO3C032185.2 Cucumis melo
Migut.C01152 Erythranthe guttata
Migut.L00778 Erythranthe guttata
MSTRG.24155 Avicennia marina
MSTRG.3634 Avicennia marina
Nitab4.5_0001467g0120 Nicotiana tabacum
Nitab4.5_0001926g0080 Nicotiana tabacum
Nitab4.5_0004554g0020 Nicotiana tabacum
Nitab4.5_0006028g0010 Nicotiana tabacum
Nitab4.5_0008533g0010 Nicotiana tabacum
Nitab4.5_0010278g0010 Nicotiana tabacum
Nn1g08696 Nelumbo nucifera
Nn5g28158 Nelumbo nucifera
Oeu012456.1 Olea europaea
Oeu050895.1 Olea europaea
Os02g0754100 Oryza sativa ssp. japonica
Os03g0129200 Oryza sativa ssp. japonica
Peaxi162Scf00040g03136 Petunia axillaris
Peaxi162Scf00051g00722 Petunia axillaris
Peaxi162Scf00160g00627 Petunia axillaris
Peaxi162Scf00160g00628 Petunia axillaris
Peaxi162Scf00304g00230 Petunia axillaris
Peaxi162Scf00412g00054 Petunia axillaris
Peaxi162Scf00417g00611 Petunia axillaris
PGR004G0941 Punica granatum
PGR042G3997 Punica granatum
PGSC0003DMG400000905 Solanum tuberosum
PGSC0003DMG400014596 Solanum tuberosum
PGSC0003DMG400025990 Solanum tuberosum
Phvul.008G165700 Phaseolus vulgaris
Phvul.009G142600 Phaseolus vulgaris
Potri.001G137401 Populus trichocarpa
Potri.002G086400 Populus trichocarpa
Potri.004G206650 Populus trichocarpa
Potri.005G174800 Populus trichocarpa
Potri.007G059100 Populus trichocarpa
Pp3c16_17530 Physcomitrium patens
Pp3c2_21290 Physcomitrium patens
PRCOL_00000581 Prasinoderma coloniale
PRCOL_00000788 Prasinoderma coloniale
Prupe.1G501900 Prunus persica
Prupe.7G185100 Prunus persica
Psat0s2855g0120 Pisum sativum
Psat0s2855g0160 Pisum sativum
Psat2g078400 Pisum sativum
Psat3g179240 Pisum sativum
Psat4g104600 Pisum sativum
Psat4g159480 Pisum sativum
Psat7g123360 Pisum sativum
PSO210G0971 Papaver somniferum
PSO447G0173 Papaver somniferum
PSO541G0991 Papaver somniferum
PSO675G7681 Papaver somniferum
QL06p053209 Quercus lobata
QL09p035311 Quercus lobata
QL09p036540 Quercus lobata
RcHm_v2.0_Chr2g0096961 Rosa chinensis
RcHm_v2.0_Chr6g0295321 Rosa chinensis
Rhsim10G0192800 Rhododendron simsii
RhsimUnG0094900 Rhododendron simsii
Sabra02G0067800 Salix brachista
Sabra05G0132000 Salix brachista
Sabra07G0050400 Salix brachista
SalBow6G5571 Salvia bowleyana
SalBow6G6346 Salvia bowleyana
Sc10g0009280 Simmondsia chinensis
Sc26g0000330 Simmondsia chinensis
Sed0000096 Sechium edule
Sed0025890 Sechium edule
SEGI_05068 Sequoiadendron giganteum
SEGI_08182 Sequoiadendron giganteum
SEGI_09161 Sequoiadendron giganteum
SEGI_16039 Sequoiadendron giganteum
SEGI_16833 Sequoiadendron giganteum
SEGI_19564 Sequoiadendron giganteum
SEGI_23932 Sequoiadendron giganteum
SEGI_34123 Sequoiadendron giganteum
SEGI_40239 Sequoiadendron giganteum
SGA_v2.0_scaffold132G34513 Striga asiatica
SGA_v2.0_scaffold14G07128 Striga asiatica
SGA_v2.0_scaffold25G11108 Striga asiatica
SHI29554 Sapria himalayana
SMO228G0002 Selaginella moellendorffii
SMO228G0179 Selaginella moellendorffii
SMO230G0006 Selaginella moellendorffii
Solyc02g082460.3 Solanum lycopersicum
Solyc11g013030.2 Solanum lycopersicum
Sopen02g027150 Solanum pennellii
Sopen11g007770 Solanum pennellii
Sp3g30870 Schrenkiella parvula
Sp5g32850 Schrenkiella parvula
TAR381G0559 Trochodendron aralioides
TAR381G0949 Trochodendron aralioides
TAR625G1072 Trochodendron aralioides
TAR628G0475 Trochodendron aralioides
TAR628G1413 Trochodendron aralioides
THA.LOC104813649 Tarenaya hassleriana
THA.LOC104819712 Tarenaya hassleriana
Thecc.01G003600 Theobroma cacao
Thecc.08G121000 Theobroma cacao
Thhalv10018051m.g Eutrema salsugineum
Thhalv10022534m.g Eutrema salsugineum
TPR.G13725 Trifolium pratense
TPR.G8512 Trifolium pratense
TWI12G0723 Tripterygium wilfordii
TWI56G0793 Tripterygium wilfordii
TWI73G1258 Tripterygium wilfordii
unitig_61.g26064 Utricularia gibba
unitig_747.g21786 Utricularia gibba
vmacro00814 Vaccinium macrocarpon
vmacro20619 Vaccinium macrocarpon
VMungo0647G0069 Vigna mungo
VMungo1215G1369 Vigna mungo
Zm00001eb002260 Zea mays
Zm00001eb026040 Zea mays
Zm00001eb194140 Zea mays
Zm00001eb197190 Zea mays
Zm00001eb248030 Zea mays
Zm00001eb308970 Zea mays
Zm00001eb330250 Zea mays

User provided reference genes

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