Gene: AT1G77680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G77680
  • Transcript Identifier AT1G77680.1
  • Gene Type Coding gene
  • Location Chr1 : 29192188-29195963 : negative

Gene Family Information

  • ID HOM05D002169
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G77680.1
  • Alias AtRRP44B,RRP44B,Rrp44 homolog B,SOV,SUPPRESSOR OF VARICOSE
  • uniprot Q0WPN0

Descriptions

  • Description Ribonuclease II/R family protein
  • Computational description Ribonuclease II/R family protein; FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 8235 Blast hits to 8065 proteins in 2328 species: Archae - 43; Bacteria - 5411; Metazoa - 476; Fungi - 391; Plants - 139; Viruses - 2; Other Eukaryotes - 1773 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000291
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic
GO:1990074
IEA
GOA Databasepolyuridylation-dependent mRNA catabolic process
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0006402
IBA
Gene OntologymRNA catabolic process1
GO:0034427
IEA
Gene Ontologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000175
IEA
GOA Database3'-5'-exoribonuclease activity
GO:0000175
IBA
Gene Ontology3'-5'-exoribonuclease activity1
GO:0004540
IEA
GOA Databaseribonuclease activity
GO:0004540
IEA
InterProribonuclease activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000932
IEA
GOA DatabaseP-body
GO:0000932
IBA
Gene OntologyP-body1
GO:0000178
IBA
Gene Ontologyexosome (RNase complex)1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001900 Ribonuclease II/R
IPR012340 Nucleic acid-binding, OB-fold
IPR041505 Dis3-like cold-shock domain 2
Mapman id Description
16.4.2.7 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.exoribonuclease (SOV)