Gene: HPP92_010129

General Information

Structural Information

  • Species Vanilla planifolia
  • Gene Identifier HPP92_010129
  • Transcript Identifier Vpl05Ag10129.1
  • Gene Type Coding gene
  • Location CM028154.1 : 1058369-1085748 : negative

Gene Family Information

  • ID HOM05D002169
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Vpl05Ag10129.1
  • pid KAG0479271.1

Descriptions

  • Description DIS3-like exonuclease 2 ***
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g052980.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0004540
IEA
InterProribonuclease activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G58510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT3G58510
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G42520
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G58510
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G58510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR041505 Dis3-like cold-shock domain 2
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001900 Ribonuclease II/R
IPR044763 Ded1/Dbp1, DEAD-box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.4.2.7 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.exoribonuclease (SOV)