Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03730 Brassica napus
A03p43920 Brassica napus
A10p28390 Brassica napus
Aa31LG3G18280 Aethionema arabicum
Aa31LG8G7820 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2466 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2709 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2714 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3035 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_262.2 Anthoceros agrestis
Actinidia11776 Actinidia chinensis
Actinidia30091 Actinidia chinensis
Actinidia37580 Actinidia chinensis
Ah.01g001480 Amaranthus hybridus
Ah.02g123070 Amaranthus hybridus
AL3G40450 Arabidopsis lyrata
AL6G18690 Arabidopsis lyrata
Aqoxy2G03787 Aquilegia oxysepala
Aqoxy4G02565 Aquilegia oxysepala
Aqoxy5G02841 Aquilegia oxysepala
Aqoxy6G02460 Aquilegia oxysepala
Aqoxy6G02461 Aquilegia oxysepala
Aqoxy6G02479 Aquilegia oxysepala
Aqoxy6G02490 Aquilegia oxysepala
Aqoxy6G02504 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6V862X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BW0B7M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EUH4MM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MJ77G4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TM6127 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YI48ND Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z1MAHQ Arachis hypogaea
AT3G24730 Arabidopsis thaliana
AT5G08290 Arabidopsis thaliana
ATR0580G225 Amborella trichopoda
ATR0618G388 Amborella trichopoda
Atru.chr10.2082 Acer truncatum
Atru.chr10.2093 Acer truncatum
Atru.chr10.510 Acer truncatum
Atru.chr11.1139 Acer truncatum
Atru.chr8.786 Acer truncatum
AUR62003737 Chenopodium quinoa
AUR62016566 Chenopodium quinoa
AUR62017709 Chenopodium quinoa
AUR62032972 Chenopodium quinoa
AUR62037535 Chenopodium quinoa
AUR62044047 Chenopodium quinoa
BcaB01g05617 Brassica carinata
BcaB03g14567 Brassica carinata
BcaB06g26686 Brassica carinata
BcaB08g37267 Brassica carinata
BcaC01g03256 Brassica carinata
BolC3t12953H Brassica oleracea
BolC3t14556H Brassica oleracea
BolC3t17713H Brassica oleracea
BolC9t59611H Brassica oleracea
BraA03t09720Z Brassica rapa
BraA03t13522Z Brassica rapa
BraA10t44886Z Brassica rapa
C03p04210 Brassica napus
C03p21740 Brassica napus
C03p54270 Brassica napus
C09p68650 Brassica napus
CAN.G39.8 Capsicum annuum
CAN.G619.2 Capsicum annuum
CAN.G771.59 Capsicum annuum
CANSAT01G0581 Cannabis sativa
CANSAT01G2429 Cannabis sativa
CANSAT21G1621 Cannabis sativa
CANSAT78G1293 Cannabis sativa
CARHR101060 Cardamine hirsuta
CARHR204840 Cardamine hirsuta
Carub.0003s2512 Capsella rubella
Carub.0006s0717 Capsella rubella
Ca_10470_v3 Cicer arietinum L.
Ca_26215_v3 Cicer arietinum L.
CBR_g37628 Chara braunii
CBR_g52407 Chara braunii
Cc00_g07500 Coffea canephora
Cc02_g27700 Coffea canephora
Cc02_g29620 Coffea canephora
Cc04_g16440 Coffea canephora
CDE02G1905 Ceratophyllum demersum
CDE02G3332 Ceratophyllum demersum
CDE05G1339 Ceratophyllum demersum
CDE05G2140 Ceratophyllum demersum
Cfa002548 Carpinus fangiana
Cfa008511 Carpinus fangiana
Cfa008744 Carpinus fangiana
Cfa022196 Carpinus fangiana
Cfa025536 Carpinus fangiana
Ciclev10022683m.g Citrus clementina
Ciclev10033145m.g Citrus clementina
CiPaw.03G151600 Carya illinoinensis
CiPaw.05G169500 Carya illinoinensis
CiPaw.11G063600 Carya illinoinensis
ClCG02G012920 Citrullus lanatus
ClCG02G014070 Citrullus lanatus
ClCG09G009170 Citrullus lanatus
COL.COLO4_11908 Corchorus olitorius
COL.COLO4_17529 Corchorus olitorius
COL.COLO4_33046 Corchorus olitorius
Cpa.g.sc0.125 Carica papaya
Cpa.g.sc0.127 Carica papaya
Cpa.g.sc8.177 Carica papaya
Cre01.g055416 Chlamydomonas reinhardtii
CsaV3_2G017010 Cucumis sativus L.
CsaV3_5G006100 Cucumis sativus L.
CsaV3_7G025770 Cucumis sativus L.
CSS0019761 Camellia sinensis var. sinensis
CSS0031084 Camellia sinensis var. sinensis
DCAR_002588 Daucus carota
DCAR_012631 Daucus carota
DCAR_030344 Daucus carota
Dinv04667 Davidia involucrata
Dinv11724 Davidia involucrata
Dinv17621 Davidia involucrata
Duzib052G0312 Durio zibethinus
Duzib116G0073 Durio zibethinus
Duzib132G0261 Durio zibethinus
Duzib213G0818 Durio zibethinus
Duzib248G0673 Durio zibethinus
EL10Ac1g01456 Beta vulgaris
EL10Ac4g08878 Beta vulgaris
EL10Ac6g15041 Beta vulgaris
EL10Ac9g22961 Beta vulgaris
Eucgr.G02580 Eucalyptus grandis
Eucgr.H00809 Eucalyptus grandis
FAN07G2800 Fragaria x ananassa
FAN11G0824 Fragaria x ananassa
FAN11G2562 Fragaria x ananassa
FAN12G3594 Fragaria x ananassa
FAN16G0542 Fragaria x ananassa
FAN16G2655 Fragaria x ananassa
FAN17G2152 Fragaria x ananassa
FAN21G3862 Fragaria x ananassa
FAN25G3251 Fragaria x ananassa
FAN25G3722 Fragaria x ananassa
FvH4_3g25760 Fragaria vesca
FvH4_4g37030 Fragaria vesca
FvH4_4g37070 Fragaria vesca
Glyma.09G283300 Glycine max
Glyma.11G099400 Glycine max
Glyma.19G111800 Glycine max
Glyma.20G189700 Glycine max
Gohir.A01G053300 Gossypium hirsutum
Gohir.A04G108600 Gossypium hirsutum
Gohir.A05G301900 Gossypium hirsutum
Gohir.A06G100902 Gossypium hirsutum
Gohir.A06G165550 Gossypium hirsutum
Gohir.A10G177000 Gossypium hirsutum
Gohir.A12G050150 Gossypium hirsutum
Gohir.D01G013900 Gossypium hirsutum
Gohir.D01G042702 Gossypium hirsutum
Gohir.D04G148200 Gossypium hirsutum
Gohir.D10G159650 Gossypium hirsutum
Gohir.D13G061100 Gossypium hirsutum
Gorai.002G053700 Gossypium raimondii
Gorai.011G179300 Gossypium raimondii
Gorai.012G134400 Gossypium raimondii
Gorai.013G069500 Gossypium raimondii
GSVIVG01018060001 Vitis vinifera
GSVIVG01028558001 Vitis vinifera
HanXRQChr01g0014701 Helianthus annuus
HanXRQChr09g0276561 Helianthus annuus
Haze_11134 Corylus avellana
Haze_11760 Corylus avellana
Haze_24772 Corylus avellana
Hma1.2p1_0044F.1_g026030 Hydrangea macrophylla
Hma1.2p1_0670F.1_g200480 Hydrangea macrophylla
Hma1.2p1_0670F.1_g200490 Hydrangea macrophylla
Hma1.2p1_0933F.1_g238370 Hydrangea macrophylla
HPP92_008933 Vanilla planifolia
HPP92_010015 Vanilla planifolia
HPP92_015281 Vanilla planifolia
Hund03594 Selenicereus undatus
Hund05522 Selenicereus undatus
Hund08606 Selenicereus undatus
Lalb_Chr18g0051541 Lupinus albus
Lalb_Chr21g0313131 Lupinus albus
Lj1g0020348 Lotus japonicus
Lj2A1134T22 Lonicera japonica
Lj2A1134T23 Lonicera japonica
Lj3A848T57 Lonicera japonica
Lj5C334T8 Lonicera japonica
Lj5g0012786 Lotus japonicus
Lj5g0014177 Lotus japonicus
Lj5g0025373 Lotus japonicus
Lj6g0020369 Lotus japonicus
Lsat_1_v5_gn_4_94421 Lactuca sativa
Lsat_1_v5_gn_5_179721 Lactuca sativa
Manes.03G120700 Manihot esculenta
Manes.12G042200 Manihot esculenta
Manes.12G155200 Manihot esculenta
Manes.13G084100 Manihot esculenta
Mapoly0023s0044 Marchantia polymorpha
Mapoly0122s0053 Marchantia polymorpha
MBI06_g19064_MAGBIO Magnolia biondii
MBI06_g20295_MAGBIO Magnolia biondii
MBI15_g31900_MAGBIO Magnolia biondii
MBI16_g11671_MAGBIO Magnolia biondii
MCO01G103 Micromonas commoda
MD11G1172800 Malus domestica
MD13G1003900 Malus domestica
MD13G1004000 Malus domestica
MD16G1003600 Malus domestica
Medtr1g045900 Medicago truncatula
Medtr1g054195 Medicago truncatula
Medtr1g080840 Medicago truncatula
Medtr3g108770 Medicago truncatula
Medtr4g075190 Medicago truncatula
Medtr5g075850 Medicago truncatula
MELO3C011749.2 Cucumis melo
MELO3C012778.2 Cucumis melo
MELO3C020882.2 Cucumis melo
Migut.A00107 Erythranthe guttata
Migut.D00518 Erythranthe guttata
Migut.L01062 Erythranthe guttata
MSTRG.14073 Avicennia marina
MSTRG.21434 Avicennia marina
MSTRG.25972 Avicennia marina
Nitab4.5_0002085g0120 Nicotiana tabacum
Nitab4.5_0005579g0010 Nicotiana tabacum
Nitab4.5_0006465g0020 Nicotiana tabacum
Nitab4.5_0006691g0030 Nicotiana tabacum
Nitab4.5_0009973g0020 Nicotiana tabacum
Nitab4.5_0012292g0010 Nicotiana tabacum
Nn1g03143 Nelumbo nucifera
Nn4g24967 Nelumbo nucifera
Oeu004628.2 Olea europaea
Oeu020385.1 Olea europaea
Oeu052505.1 Olea europaea
Os07g0202300 Oryza sativa ssp. japonica
Os10g0486600 Oryza sativa ssp. japonica
Os11g0297900 Oryza sativa ssp. japonica
Peaxi162Scf00160g00134 Petunia axillaris
Peaxi162Scf00517g00431 Petunia axillaris
Peaxi162Scf00673g00449 Petunia axillaris
Peaxi162Scf00681g00116 Petunia axillaris
PGR083G0261 Punica granatum
PGR142G1700 Punica granatum
PGSC0003DMG400006733 Solanum tuberosum
PGSC0003DMG400020157 Solanum tuberosum
PGSC0003DMG400032544 Solanum tuberosum
Phvul.003G004100 Phaseolus vulgaris
Phvul.006G122000 Phaseolus vulgaris
Phvul.007G144300 Phaseolus vulgaris
Potri.001G287600 Populus trichocarpa
Potri.007G072700 Populus trichocarpa
Pp3c10_13070 Physcomitrium patens
Pp3c22_7790 Physcomitrium patens
PRCOL_00003262 Prasinoderma coloniale
Prupe.1G348600 Prunus persica
Prupe.2G099400 Prunus persica
Prupe.6G164200 Prunus persica
Psat5g176160 Pisum sativum
Psat6g109480 Pisum sativum
Psat7g108600 Pisum sativum
PSO017G6619 Papaver somniferum
PSO063G5541 Papaver somniferum
PSO063G5597 Papaver somniferum
PSO063G6018 Papaver somniferum
PSO170G2874 Papaver somniferum
PSO455G0057 Papaver somniferum
PSO782G1860 Papaver somniferum
QL04p055010 Quercus lobata
QL04p069147 Quercus lobata
QL06p010399 Quercus lobata
QL07p034561 Quercus lobata
QL07p034597 Quercus lobata
QL07p034638 Quercus lobata
QL08p015909 Quercus lobata
QL08p015943 Quercus lobata
QL08p015961 Quercus lobata
RcHm_v2.0_Chr4g0446821 Rosa chinensis
RcHm_v2.0_Chr5g0009351 Rosa chinensis
RcHm_v2.0_Chr5g0046911 Rosa chinensis
RcHm_v2.0_Chr5g0047331 Rosa chinensis
Rhsim01G0257800 Rhododendron simsii
Rhsim02G0166000 Rhododendron simsii
Rhsim02G0166100 Rhododendron simsii
Rhsim09G0071200 Rhododendron simsii
Sabra07G0061300 Salix brachista
Sabra16G0179900 Salix brachista
SalBow1G8011 Salvia bowleyana
SalBow4G2176 Salvia bowleyana
Sc05g0002380 Simmondsia chinensis
Sc06g0006780 Simmondsia chinensis
Sc06g0006820 Simmondsia chinensis
Sed0003158 Sechium edule
Sed0020604 Sechium edule
Sed0026342 Sechium edule
SEGI_15674 Sequoiadendron giganteum
SEGI_21576 Sequoiadendron giganteum
SEGI_33725 Sequoiadendron giganteum
SEGI_34564 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00713 Striga asiatica
SGA_v2.0_scaffold20G09194 Striga asiatica
SGA_v2.0_scaffold467G52032 Striga asiatica
SGA_v2.0_scaffold478G52236 Striga asiatica
SGA_v2.0_scaffold64G21852 Striga asiatica
SMO364G0337 Selaginella moellendorffii
SMO364G0432 Selaginella moellendorffii
SMO367G1217 Selaginella moellendorffii
Solyc04g009230.4 Solanum lycopersicum
Solyc06g083570.3 Solanum lycopersicum
Sopen02g004390 Solanum pennellii
Sopen04g004360 Solanum pennellii
Sopen06g034950 Solanum pennellii
Sp3g22460 Schrenkiella parvula
Sp6g34670 Schrenkiella parvula
TAR365G0897 Trochodendron aralioides
TAR629G2537 Trochodendron aralioides
THA.LOC104800843 Tarenaya hassleriana
THA.LOC104808775 Tarenaya hassleriana
THA.LOC104818521 Tarenaya hassleriana
THA.LOC104821641 Tarenaya hassleriana
Thecc.02G158600 Theobroma cacao
Thecc.02G222300 Theobroma cacao
Thecc.07G118300 Theobroma cacao
Thhalv10002702m.g Eutrema salsugineum
Thhalv10005545m.g Eutrema salsugineum
Thhalv10014963m.g Eutrema salsugineum
TPR.G12436 Trifolium pratense
TPR.G22393 Trifolium pratense
TPR.G23985 Trifolium pratense
TWI36G0271 Tripterygium wilfordii
TWI36G0299 Tripterygium wilfordii
TWI36G1675 Tripterygium wilfordii
TWI75G1835 Tripterygium wilfordii
unitig_26.g9800 Utricularia gibba
unitig_749.g13832 Utricularia gibba
unitig_8.g3604 Utricularia gibba
vmacro00209 Vaccinium macrocarpon
vmacro11682 Vaccinium macrocarpon
vmacro12057 Vaccinium macrocarpon
vmacro14768 Vaccinium macrocarpon
VMungo0251G3066 Vigna mungo
VMungo0720G1587 Vigna mungo
VMungo1127G0144 Vigna mungo
Zm00001eb042390 Zea mays
Zm00001eb076790 Zea mays
Zm00001eb244630 Zea mays
Zm00001eb327680 Zea mays

User provided reference genes

Program Settings