Gene: PGSC0003DMG400006733

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400006733
  • Transcript Identifier PGSC0003DMT400017277
  • Gene Type Coding gene
  • Location ST4.03ch02 : 7831660-7837142 : negative

Gene Family Information

  • ID HOM05D001910
  • #Genes/#Species 344/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37427857
  • id PGSC0003DMG400006733.v4.03
  • uniprot M1A8S1

Descriptions

  • Description Thioredoxin-like U5 small ribonucleoprotein particle protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G08290

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005682
IBA
IEA
GOA DatabaseU5 snRNP
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IBA
GOA Databasespliceosomal complex
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G08290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036249 Thioredoxin-like superfamily
IPR004123 Dim1 family
Mapman id Description
16.2.1.4.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (U5-15kDa/YLS8)