Gene: Solyc04g009230.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g009230.4
  • Transcript Identifier Solyc04g009230.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 2744009-2746698 : negative

Gene Family Information

  • ID HOM05D001910
  • #Genes/#Species 344/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g009230.4.1
  • uniprot A0A3Q7G001
  • gene_id Solyc04g009230

Descriptions

  • Description Thioredoxin-like protein 4A (AHRD V3.3 *** A0A1U8FZJ9_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G08290

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005682
IBA
IEA
GOA DatabaseU5 snRNP
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IBA
GOA Databasespliceosomal complex
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G08290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004123 Dim1 family
IPR036249 Thioredoxin-like superfamily
Mapman id Description
16.2.1.4.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (U5-15kDa/YLS8)