Gene: AT5G08290

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G08290
  • Transcript Identifier AT5G08290.1
  • Gene Type Coding gene
  • Location Chr5 : 2666043-2666936 : positive

Gene Family Information

  • ID HOM05D001910
  • #Genes/#Species 344/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G08290.1
  • symbol YLS8
  • full_name YELLOW-LEAF-SPECIFIC GENE 8
  • uniprot Q9FE62

Descriptions

  • Description mRNA splicing factor, thioredoxin-like U5 snRNP
  • Computational description YELLOW-LEAF-SPECIFIC GENE 8 (YLS8); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR:AT3G24730.1); Has 564 Blast hits to 564 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
Gene OntologymRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus2
GO:0046540
IBA
IEA
Gene OntologyU4/U6 x U5 tri-snRNP complex3
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm2
GO:0005682
IBA
Gene OntologyU5 snRNP3
GO:0005681
IBA
Gene Ontologyspliceosomal complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004123 Dim1 family
IPR036249 Thioredoxin-like superfamily
Mapman id Description
16.2.1.4.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (U5-15kDa/YLS8)