Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p05710 Brassica napus
A03p35070 Brassica napus
A05p41100 Brassica napus
A06p22040 Brassica napus
A09p66330 Brassica napus
Aa31LG2G17010 Aethionema arabicum
Aa31LG4G13840 Aethionema arabicum
Aa31sc104G40 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4108 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.225 Anthoceros agrestis
Actinidia18893 Actinidia chinensis
Actinidia19964 Actinidia chinensis
Actinidia21145 Actinidia chinensis
Actinidia24925 Actinidia chinensis
Actinidia24926 Actinidia chinensis
Actinidia26567 Actinidia chinensis
Actinidia28144 Actinidia chinensis
Actinidia28183 Actinidia chinensis
Actinidia35135 Actinidia chinensis
Actinidia37375 Actinidia chinensis
Ah.07g208360 Amaranthus hybridus
Ah.09g226350 Amaranthus hybridus
Ah.10g035790 Amaranthus hybridus
Ah.16g104550 Amaranthus hybridus
AL3G18330 Arabidopsis lyrata
AL5G22490 Arabidopsis lyrata
AL7G19120 Arabidopsis lyrata
Aqoxy5G01202 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.766E3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IT2EAD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q6VS78 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TDW4P3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YNM6HM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z10DQP Arachis hypogaea
AT3G07100 Arabidopsis thaliana
AT3G44340 Arabidopsis thaliana
AT4G32640 Arabidopsis thaliana
ATR0751G054 Amborella trichopoda
ATR1136G050 Amborella trichopoda
Atru.chr2.3606 Acer truncatum
Atru.chr2.719 Acer truncatum
AUR62011142 Chenopodium quinoa
AUR62013345 Chenopodium quinoa
AUR62016088 Chenopodium quinoa
AUR62031536 Chenopodium quinoa
AUR62034694 Chenopodium quinoa
AUR62035035 Chenopodium quinoa
BcaB01g01168 Brassica carinata
BcaB04g21312 Brassica carinata
BcaC01g02032 Brassica carinata
BcaC05g29755 Brassica carinata
BcaC05g29839 Brassica carinata
BcaC09g47940 Brassica carinata
BcaC09g52057 Brassica carinata
BcaNung06472 Brassica carinata
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus
BolC1t00627H Brassica oleracea
BolC1t05569H Brassica oleracea
BolC3t16535H Brassica oleracea
BolC3t19190H Brassica oleracea
BolC5t34677H Brassica oleracea
BolC8t52577H Brassica oleracea
BraA01t00541Z Brassica rapa
BraA01t04397Z Brassica rapa
BraA03t12687Z Brassica rapa
BraA05t22837Z Brassica rapa
BraA06t25293Z Brassica rapa
C01p06290 Brassica napus
C03p42650 Brassica napus
C03p69320 Brassica napus
C05p60290 Brassica napus
CAN.G1549.17 Capsicum annuum
CAN.G1549.18 Capsicum annuum
CAN.G1549.19 Capsicum annuum
CAN.G178.5 Capsicum annuum
CAN.G178.6 Capsicum annuum
CAN.G809.4 Capsicum annuum
CANSAT64G0229 Cannabis sativa
CANSAT78G1415 Cannabis sativa
CARHR081690 Cardamine hirsuta
CARHR081700 Cardamine hirsuta
CARHR104530 Cardamine hirsuta
CARHR240610 Cardamine hirsuta
Carub.0003s0661 Capsella rubella
Carub.0005s1006 Capsella rubella
Carub.0007s0790 Capsella rubella
Ca_09281_v3 Cicer arietinum L.
Ca_11199_v3 Cicer arietinum L.
CBR_g26046 Chara braunii
CBR_g39318 Chara braunii
CBR_g52686 Chara braunii
Cc00_g08870 Coffea canephora
Cc10_g12580 Coffea canephora
Cc11_g02760 Coffea canephora
CDE02G2954 Ceratophyllum demersum
CDE02G3197 Ceratophyllum demersum
CDE09G0038 Ceratophyllum demersum
CDE11G1130 Ceratophyllum demersum
Cfa006741 Carpinus fangiana
Cfa010617 Carpinus fangiana
Cfa010618 Carpinus fangiana
Cfa024949 Carpinus fangiana
Ciclev10000082m.g Citrus clementina
Ciclev10002871m.g Citrus clementina
Ciclev10003140m.g Citrus clementina
Ciclev10007324m.g Citrus clementina
CiPaw.01G205900 Carya illinoinensis
CiPaw.02G127500 Carya illinoinensis
CiPaw.07G034200 Carya illinoinensis
CiPaw.08G152500 Carya illinoinensis
ClCG06G007370 Citrullus lanatus
COL.COLO4_09790 Corchorus olitorius
COL.COLO4_15269 Corchorus olitorius
COL.COLO4_15270 Corchorus olitorius
COL.COLO4_18385 Corchorus olitorius
COL.COLO4_38222 Corchorus olitorius
Cpa.g.sc25.38 Carica papaya
Cpa.g.sc264.15 Carica papaya
Cpa.g.sc418.1 Carica papaya
Cpa.g.sc418.3 Carica papaya
Cpa.g.sc64.94 Carica papaya
Cre01.g035850 Chlamydomonas reinhardtii
Cre02.g091150 Chlamydomonas reinhardtii
CsaV3_1G037990 Cucumis sativus L.
CsaV3_2G012310 Cucumis sativus L.
CSS0000827 Camellia sinensis var. sinensis
CSS0006039 Camellia sinensis var. sinensis
CSS0020759 Camellia sinensis var. sinensis
CSS0043007 Camellia sinensis var. sinensis
CSS0045880 Camellia sinensis var. sinensis
CSS0048569 Camellia sinensis var. sinensis
CSS0050189 Camellia sinensis var. sinensis
DCAR_002199 Daucus carota
DCAR_002698 Daucus carota
DCAR_019429 Daucus carota
DCAR_030894 Daucus carota
Dinv07558 Davidia involucrata
Dinv07595 Davidia involucrata
Dinv08831 Davidia involucrata
Duzib041G0337 Durio zibethinus
Duzib093G0596 Durio zibethinus
Duzib116G0873 Durio zibethinus
Duzib170G0107 Durio zibethinus
Duzib177G0985 Durio zibethinus
Duzib213G0046 Durio zibethinus
ECA234G0611 Erigeron canadensis
ECA236G2488 Erigeron canadensis
ECA236G2831 Erigeron canadensis
ECA248G3342 Erigeron canadensis
EL10Ac2g04197 Beta vulgaris
EL10Ac3g05777 Beta vulgaris
EL10Ac8g18676 Beta vulgaris
Eucgr.B02594 Eucalyptus grandis
Eucgr.D00483 Eucalyptus grandis
FAN02G3334 Fragaria x ananassa
FAN05G4742 Fragaria x ananassa
FAN07G0905 Fragaria x ananassa
FAN07G2802 Fragaria x ananassa
FAN09G4170 Fragaria x ananassa
FAN12G0896 Fragaria x ananassa
FAN12G4023 Fragaria x ananassa
FAN14G3047 Fragaria x ananassa
FAN17G0489 Fragaria x ananassa
FAN17G2792 Fragaria x ananassa
FAN22G0203 Fragaria x ananassa
FAN22G2247 Fragaria x ananassa
FvH4_4g05490 Fragaria vesca
FvH4_4g36000 Fragaria vesca
FvH4_6g08220 Fragaria vesca
Glyma.03G229000 Glycine max
Glyma.10G144502 Glycine max
Glyma.10G280700 Glycine max
Glyma.19G226200 Glycine max
Glyma.20G093400 Glycine max
Glyma.20G109000 Glycine max
Gohir.1Z049436 Gossypium hirsutum
Gohir.A01G087500 Gossypium hirsutum
Gohir.A04G009500 Gossypium hirsutum
Gohir.A05G235800 Gossypium hirsutum
Gohir.A05G236401 Gossypium hirsutum
Gohir.A06G045200 Gossypium hirsutum
Gohir.A11G277500 Gossypium hirsutum
Gohir.A12G093750 Gossypium hirsutum
Gohir.A13G171000 Gossypium hirsutum
Gohir.D01G073800 Gossypium hirsutum
Gohir.D05G238000 Gossypium hirsutum
Gohir.D05G378400 Gossypium hirsutum
Gohir.D06G045700 Gossypium hirsutum
Gohir.D11G287766 Gossypium hirsutum
Gohir.D13G176500 Gossypium hirsutum
Gorai.002G096700 Gossypium raimondii
Gorai.007G311200 Gossypium raimondii
Gorai.009G246400 Gossypium raimondii
Gorai.009G446300 Gossypium raimondii
Gorai.010G050900 Gossypium raimondii
Gorai.013G201900 Gossypium raimondii
GSVIVG01014261001 Vitis vinifera
GSVIVG01014611001 Vitis vinifera
HanXRQChr01g0005691 Helianthus annuus
HanXRQChr04g0126241 Helianthus annuus
HanXRQChr04g0126251 Helianthus annuus
HanXRQChr06g0164081 Helianthus annuus
HanXRQChr06g0178541 Helianthus annuus
HanXRQChr10g0319331 Helianthus annuus
HanXRQChr12g0372531 Helianthus annuus
Haze_03551 Corylus avellana
Haze_03552 Corylus avellana
Haze_04016 Corylus avellana
Haze_10739 Corylus avellana
Haze_10743 Corylus avellana
Hma1.2p1_0126F.1_g059450 Hydrangea macrophylla
HPP92_015337 Vanilla planifolia
HPP92_015341 Vanilla planifolia
HPP92_018182 Vanilla planifolia
HPP92_018183 Vanilla planifolia
HPP92_020222 Vanilla planifolia
HPP92_026962 Vanilla planifolia
Hund04502 Selenicereus undatus
Lalb_Chr02g0143321 Lupinus albus
Lalb_Chr02g0147621 Lupinus albus
Lalb_Chr06g0163581 Lupinus albus
Lalb_Chr15g0077731 Lupinus albus
Lalb_Chr18g0046161 Lupinus albus
Lalb_Chr21g0306881 Lupinus albus
Lj1g0019437 Lotus japonicus
Lj5g0013841 Lotus japonicus
Lj6A295T8 Lonicera japonica
Lsat_1_v5_gn_2_134061 Lactuca sativa
Lsat_1_v5_gn_5_142520 Lactuca sativa
Lsat_1_v5_gn_5_185281 Lactuca sativa
Lsat_1_v5_gn_7_37081 Lactuca sativa
Lsat_1_v5_gn_8_87660 Lactuca sativa
Lsat_1_v5_gn_8_93900 Lactuca sativa
Manes.03G138000 Manihot esculenta
Manes.08G127600 Manihot esculenta
Manes.09G156800 Manihot esculenta
Manes.15G062800 Manihot esculenta
Mapoly0009s0021 Marchantia polymorpha
Mapoly0009s0042 Marchantia polymorpha
MBI11_g11869_MAGBIO Magnolia biondii
MBI17_g19522_MAGBIO Magnolia biondii
MCO01G512 Micromonas commoda
MCO01G513 Micromonas commoda
MCO02G136 Micromonas commoda
MD02G1169200 Malus domestica
MD04G1188900 Malus domestica
MD05G1027300 Malus domestica
MD12G1201700 Malus domestica
MD13G1230500 Malus domestica
MD15G1281700 Malus domestica
MD16G1009900 Malus domestica
MD16G1235300 Malus domestica
Medtr1g068945 Medicago truncatula
Medtr1g112310 Medicago truncatula
Medtr4g063795 Medicago truncatula
Medtr6g042060 Medicago truncatula
Medtr7g111710 Medicago truncatula
Medtr8g096550 Medicago truncatula
MELO3C015246.2 Cucumis melo
MELO3C023056.2 Cucumis melo
Migut.D00353 Erythranthe guttata
Migut.D01222 Erythranthe guttata
Migut.N02026 Erythranthe guttata
Migut.N02176 Erythranthe guttata
Migut.O00347 Erythranthe guttata
Migut.O00858 Erythranthe guttata
MSTRG.11252 Avicennia marina
MSTRG.12546 Avicennia marina
MSTRG.18271 Avicennia marina
MSTRG.21524 Avicennia marina
MSTRG.22877 Avicennia marina
Nitab4.5_0000235g0180 Nicotiana tabacum
Nitab4.5_0000855g0200 Nicotiana tabacum
Nitab4.5_0000971g0140 Nicotiana tabacum
Nitab4.5_0001003g0210 Nicotiana tabacum
Nitab4.5_0001877g0030 Nicotiana tabacum
Nitab4.5_0003141g0050 Nicotiana tabacum
Nitab4.5_0003928g0020 Nicotiana tabacum
Nitab4.5_0009685g0010 Nicotiana tabacum
Nn4g24975 Nelumbo nucifera
Nn5g27591 Nelumbo nucifera
Oeu000641.1 Olea europaea
Oeu007942.1 Olea europaea
Oeu016180.2 Olea europaea
Oeu016181.1 Olea europaea
Oeu023511.1 Olea europaea
Oeu025770.1 Olea europaea
Oeu030640.3 Olea europaea
Oeu064279.1 Olea europaea
Os04g0129500 Oryza sativa ssp. japonica
Os11g0482100 Oryza sativa ssp. japonica
Os12g0430000 Oryza sativa ssp. japonica
Peaxi162Scf00254g00617 Petunia axillaris
Peaxi162Scf00431g00311 Petunia axillaris
Peaxi162Scf00981g00314 Petunia axillaris
PGR031G1330 Punica granatum
PGR142G2807 Punica granatum
PGSC0003DMG400020130 Solanum tuberosum
PGSC0003DMG400023363 Solanum tuberosum
PGSC0003DMG401013636 Solanum tuberosum
PGSC0003DMG402013636 Solanum tuberosum
Phvul.001G223000 Phaseolus vulgaris
Phvul.007G020300 Phaseolus vulgaris
Phvul.007G204100 Phaseolus vulgaris
Potri.002G082900 Populus trichocarpa
Potri.005G049100 Populus trichocarpa
Potri.008G049700 Populus trichocarpa
Potri.010G211100 Populus trichocarpa
Potri.013G035800 Populus trichocarpa
Pp3c1_17880 Physcomitrium patens
Pp3c1_22750 Physcomitrium patens
Pp3c1_22900 Physcomitrium patens
Pp3c2_16480 Physcomitrium patens
Pp3c2_16660 Physcomitrium patens
PRCOL_00001677 Prasinoderma coloniale
PRCOL_00001802 Prasinoderma coloniale
Prupe.1G056500 Prunus persica
Prupe.1G340700 Prunus persica
Prupe.6G306800 Prunus persica
Psat0s3087g0080 Pisum sativum
Psat6g231520 Pisum sativum
Psat7g216440 Pisum sativum
PSO017G7067 Papaver somniferum
PSO210G3790 Papaver somniferum
PSO339G1365 Papaver somniferum
PSO384G3344 Papaver somniferum
PSO478G1631 Papaver somniferum
PSO832G2711 Papaver somniferum
QL03p009288 Quercus lobata
QL03p040793 Quercus lobata
QL06p022018 Quercus lobata
QL06p022712 Quercus lobata
QL11p000130 Quercus lobata
RcHm_v2.0_Chr3g0458141 Rosa chinensis
RcHm_v2.0_Chr4g0396591 Rosa chinensis
RcHm_v2.0_Chr4g0445631 Rosa chinensis
Rhsim01G0271700 Rhododendron simsii
Rhsim12G0137600 Rhododendron simsii
Rhsim13G0029400 Rhododendron simsii
Rhsim13G0029500 Rhododendron simsii
Sabra02G0065000 Salix brachista
Sabra05G0044400 Salix brachista
Sabra08G0036300 Salix brachista
Sabra10G0163300 Salix brachista
Sabra13G0035100 Salix brachista
SalBow1G7112 Salvia bowleyana
SalBow5G3735 Salvia bowleyana
SalBow6G7103 Salvia bowleyana
Sc02g0001200 Simmondsia chinensis
Sc02g0007360 Simmondsia chinensis
Sc18g0000530 Simmondsia chinensis
Sc25g0000190 Simmondsia chinensis
Sed0001443 Sechium edule
Sed0003316 Sechium edule
Sed0004074 Sechium edule
SEGI_03735 Sequoiadendron giganteum
SEGI_21675 Sequoiadendron giganteum
SEGI_37637 Sequoiadendron giganteum
SEGI_41207 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35295 Striga asiatica
SGA_v2.0_scaffold1G00538 Striga asiatica
SGA_v2.0_scaffold586G53056 Striga asiatica
SGA_v2.0_scaffold74G24693 Striga asiatica
SMO112G0113 Selaginella moellendorffii
SMO174G0032 Selaginella moellendorffii
SMO174G0268 Selaginella moellendorffii
SMO307G0046 Selaginella moellendorffii
SMO364G0465 Selaginella moellendorffii
SMO364G0846 Selaginella moellendorffii
Solyc02g082220.3 Solanum lycopersicum
Solyc05g055690.3 Solanum lycopersicum
Solyc06g084210.3 Solanum lycopersicum
Sopen02g026880 Solanum pennellii
Sopen05g034110 Solanum pennellii
Sopen06g035590 Solanum pennellii
Sp3g06040 Schrenkiella parvula
Sp5g16880 Schrenkiella parvula
Sp7g30410 Schrenkiella parvula
TAR369G0406 Trochodendron aralioides
TAR381G0151 Trochodendron aralioides
TAR625G0392 Trochodendron aralioides
TAR628G0046 Trochodendron aralioides
TAR633G2828 Trochodendron aralioides
TAR636G0666 Trochodendron aralioides
THA.LOC104800200 Tarenaya hassleriana
THA.LOC104801866 Tarenaya hassleriana
THA.LOC104802675 Tarenaya hassleriana
THA.LOC104810187 Tarenaya hassleriana
THA.LOC104818954 Tarenaya hassleriana
Thecc.05G289500 Theobroma cacao
Thecc.07G022100 Theobroma cacao
Thecc.08G126200 Theobroma cacao
Thecc.08G126400 Theobroma cacao
Thhalv10010084m.g Eutrema salsugineum
Thhalv10019975m.g Eutrema salsugineum
Thhalv10024276m.g Eutrema salsugineum
TPR.G1656 Trifolium pratense
TPR.G2430 Trifolium pratense
TWI34G0541 Tripterygium wilfordii
TWI60G1207 Tripterygium wilfordii
TWI75G0136 Tripterygium wilfordii
TWI79G1712 Tripterygium wilfordii
unitig_22.g5274 Utricularia gibba
unitig_61.g26202 Utricularia gibba
vmacro02615 Vaccinium macrocarpon
vmacro14886 Vaccinium macrocarpon
vmacro16406 Vaccinium macrocarpon
VMungo0720G1544 Vigna mungo
VMungo0720G2853 Vigna mungo
VMungo1383G3576 Vigna mungo
Zm00001eb088940 Zea mays
Zm00001eb169770 Zea mays
Zm00001eb419480 Zea mays

User provided reference genes

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