Gene: AT3G44340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G44340
  • Transcript Identifier AT3G44340.4
  • Gene Type Coding gene
  • Location Chr3 : 16011923-16019873 : negative

Gene Family Information

  • ID HOM05D001545
  • #Genes/#Species 413/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G44340.4
  • symbol CEF
  • full_name clone eighty-four
  • uniprot Q9M291

Descriptions

  • Description hypothetical protein
  • Computational description clone eighty-four (CEF); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G32640.2); Has 125534 Blast hits to 60845 proteins in 1833 species: Archae - 62; Bacteria - 18823; Metazoa - 61754; Fungi - 17926; Plants - 11260; Viruses - 2145; Other Eukaryotes - 13564 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006888
IEA
Gene Ontologyendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006888
IEA
InterProendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006886
IEA
Gene Ontologyintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0090110
IBA
Gene OntologyCOPII-coated vesicle cargo loading1
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IBA
IEA
Gene Ontologyzinc ion binding1
GO:0008270
IEA
InterProzinc ion binding
GO:0000149
IBA
Gene OntologySNARE binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0030127
IBA
IEA
Gene OntologyCOPII vesicle coat1
GO:0030127
IEA
InterProCOPII vesicle coat
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0016020
IEA
GOA Databasemembrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005829
IDA
GOA Databasecytosol
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0070971
IBA
Gene Ontologyendoplasmic reticulum exit site1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036175 Sec23/Sec24 helical domain superfamily
IPR006896 Sec23/Sec24, trunk domain
IPR036180 Gelsolin-like domain superfamily
IPR006900 Sec23/Sec24, helical domain
IPR012990 Sec23/Sec24 beta-sandwich
IPR036465 von Willebrand factor A-like domain superfamily
IPR041742 Sec24-like, trunk domain
IPR036174 Zinc finger, Sec23/Sec24-type superfamily
IPR007123 Gelsolin-like domain
IPR006895 Zinc finger, Sec23/Sec24-type
IPR029006 ADF-H/Gelsolin-like domain superfamily
Mapman id Description
22.1.1.1.3.2 Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.component Sec24