Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17980 Brassica napus
A02p09760 Brassica napus
A03p14150 Brassica napus
A03p56890 Brassica napus
A08p20740 Brassica napus
A08p36620 Brassica napus
A10p03380 Brassica napus
Aa31LG1G20030 Aethionema arabicum
Aa31LG3G11260 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3234 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis
Actinidia00113 Actinidia chinensis
Actinidia00114 Actinidia chinensis
Actinidia10787 Actinidia chinensis
Actinidia10788 Actinidia chinensis
Actinidia35374 Actinidia chinensis
Ah.04g166260 Amaranthus hybridus
Ah.14g082990 Amaranthus hybridus
AL1G14680 Arabidopsis lyrata
AL1G64580 Arabidopsis lyrata
AL7G26120 Arabidopsis lyrata
AL8G30834 Arabidopsis lyrata
Aqoxy1G04095 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9Y4IVD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B8J7LR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C8Z9ST Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E4KFI0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FLZ4J4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9VJMQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea
AT1G04950 Arabidopsis thaliana
AT4G26710 Arabidopsis thaliana
AT5G55290 Arabidopsis thaliana
ATR1101G058 Amborella trichopoda
Atru.chr2.3540 Acer truncatum
Atru.chr2.3560 Acer truncatum
Atru.chr6.3305 Acer truncatum
Atru.chr6.3306 Acer truncatum
AUR62015100 Chenopodium quinoa
AUR62015901 Chenopodium quinoa
AUR62017561 Chenopodium quinoa
AUR62020321 Chenopodium quinoa
BcaB03g12505 Brassica carinata
BcaB05g22197 Brassica carinata
BcaC03g14248 Brassica carinata
BcaC06g32730 Brassica carinata
BcaC07g36869 Brassica carinata
BcaC07g38243 Brassica carinata
BolC1t02210H Brassica oleracea
BolC2t07730H Brassica oleracea
BolC5t29092H Brassica oleracea
BolC7t45994H Brassica oleracea
BolC8t46965H Brassica oleracea
BolC8t48669H Brassica oleracea
BraA01t01753Z Brassica rapa
BraA02t06040Z Brassica rapa
BraA03t10716Z Brassica rapa
BraA03t14757Z Brassica rapa
BraA08t34028Z Brassica rapa
BraA08t35564Z Brassica rapa
BraA10t42614Z Brassica rapa
C01p22800 Brassica napus
C02p16290 Brassica napus
C05p03100 Brassica napus
C07p55180 Brassica napus
C08p01620 Brassica napus
C08p09920 Brassica napus
CAN.G290.7 Capsicum annuum
CAN.G337.48 Capsicum annuum
CAN.G492.25 Capsicum annuum
CAN.G710.54 Capsicum annuum
CANSAT11G2616 Cannabis sativa
CANSAT35G0060 Cannabis sativa
CANSAT56G4167 Cannabis sativa
CANSAT78G2243 Cannabis sativa
CARHR004360 Cardamine hirsuta
CARHR046040 Cardamine hirsuta
CARHR234330 Cardamine hirsuta
CARHR268660 Cardamine hirsuta
Carub.0001s0419 Capsella rubella
Carub.0001s4481 Capsella rubella
Carub.0007s1413 Capsella rubella
Carub.0008s1562 Capsella rubella
Ca_07287_v3 Cicer arietinum L.
Ca_14770_v3 Cicer arietinum L.
CBR_g41488 Chara braunii
CBR_g41757 Chara braunii
CBR_g74631 Chara braunii
Cc05_g02930 Coffea canephora
Cc05_g14400 Coffea canephora
Cc05_g14430 Coffea canephora
CDE04G2962 Ceratophyllum demersum
CDE05G1212 Ceratophyllum demersum
CDE06G1567 Ceratophyllum demersum
CDE11G0835 Ceratophyllum demersum
Cfa014286 Carpinus fangiana
Cfa020269 Carpinus fangiana
Cfa023649 Carpinus fangiana
Ciclev10007970m.g Citrus clementina
Ciclev10010112m.g Citrus clementina
Ciclev10014827m.g Citrus clementina
CiPaw.03G275100 Carya illinoinensis
CiPaw.11G195500 Carya illinoinensis
CiPaw.11G195700 Carya illinoinensis
CiPaw.12G134400 Carya illinoinensis
ClCG00G004150 Citrullus lanatus
ClCG02G002420 Citrullus lanatus
ClCG09G011120 Citrullus lanatus
ClCG10G004920 Citrullus lanatus
COL.COLO4_09746 Corchorus olitorius
COL.COLO4_31994 Corchorus olitorius
Cpa.g.sc12.231 Carica papaya
Cpa.g.sc12.241 Carica papaya
Cpa.g.sc132.56 Carica papaya
Cpa.g.sc132.59 Carica papaya
Cre07.g349950 Chlamydomonas reinhardtii
CsaV3_1G040420 Cucumis sativus L.
CsaV3_3G004570 Cucumis sativus L.
CsaV3_6G037540 Cucumis sativus L.
CsaV3_7G003000 Cucumis sativus L.
CSS0020811 Camellia sinensis var. sinensis
CSS0039282 Camellia sinensis var. sinensis
CSS0048655 Camellia sinensis var. sinensis
CSS0049003 Camellia sinensis var. sinensis
CSS0050069 Camellia sinensis var. sinensis
DCAR_002221 Daucus carota
DCAR_016645 Daucus carota
DCAR_019732 Daucus carota
DCAR_022596 Daucus carota
Dinv08700 Davidia involucrata
Dinv40801 Davidia involucrata
Duzib133G0537 Durio zibethinus
Duzib170G0444 Durio zibethinus
Duzib213G0269 Durio zibethinus
Duzib213G1078 Durio zibethinus
Duzib268G1739 Durio zibethinus
ECA234G4726 Erigeron canadensis
ECA236G2991 Erigeron canadensis
ECA246G1860 Erigeron canadensis
EL10Ac4g07675 Beta vulgaris
EL10Ac9g20750 Beta vulgaris
EL10Ac9g22782 Beta vulgaris
Eucgr.F00645 Eucalyptus grandis
Eucgr.F00646 Eucalyptus grandis
Eucgr.F03511 Eucalyptus grandis
Eucgr.K00716 Eucalyptus grandis
FAN02G0816 Fragaria x ananassa
FAN05G0005 Fragaria x ananassa
FAN09G2342 Fragaria x ananassa
FAN11G0198 Fragaria x ananassa
FAN11G0656 Fragaria x ananassa
FAN14G2718 Fragaria x ananassa
FAN16G1322 Fragaria x ananassa
FAN16G3611 Fragaria x ananassa
FAN21G0767 Fragaria x ananassa
FAN21G0845 Fragaria x ananassa
FAN21G3843 Fragaria x ananassa
FAN25G0400 Fragaria x ananassa
FAN25G2799 Fragaria x ananassa
FAN25G3175 Fragaria x ananassa
FvH4_3g01010 Fragaria vesca
FvH4_3g23640 Fragaria vesca
FvH4_3g23660 Fragaria vesca
FvH4_6g41670 Fragaria vesca
Glyma.02G092400 Glycine max
Glyma.02G295900 Glycine max
Glyma.08G322700 Glycine max
Glyma.08G322900 Glycine max
Glyma.14G017500 Glycine max
Glyma.18G089300 Glycine max
Glyma.18G089500 Glycine max
Glyma.18G290200 Glycine max
Gohir.A04G011400 Gossypium hirsutum
Gohir.A04G011500 Gossypium hirsutum
Gohir.A07G085500 Gossypium hirsutum
Gohir.A08G024400 Gossypium hirsutum
Gohir.A13G136100 Gossypium hirsutum
Gohir.D05G375100 Gossypium hirsutum
Gohir.D05G375350 Gossypium hirsutum
Gohir.D05G375500 Gossypium hirsutum
Gohir.D05G375600 Gossypium hirsutum
Gohir.D07G090900 Gossypium hirsutum
Gohir.D08G034900 Gossypium hirsutum
Gohir.D13G140400 Gossypium hirsutum
Gorai.001G097400 Gossypium raimondii
Gorai.004G032800 Gossypium raimondii
Gorai.009G444000 Gossypium raimondii
Gorai.009G444100 Gossypium raimondii
Gorai.009G444300 Gossypium raimondii
Gorai.013G157000 Gossypium raimondii
GSVIVG01003343001 Vitis vinifera
GSVIVG01003348001 Vitis vinifera
GSVIVG01030390001 Vitis vinifera
GSVIVG01030396001 Vitis vinifera
GSVIVG01030398001 Vitis vinifera
GSVIVG01037737001 Vitis vinifera
GSVIVG01037739001 Vitis vinifera
HanXRQChr03g0076901 Helianthus annuus
HanXRQChr05g0159691 Helianthus annuus
HanXRQChr10g0306291 Helianthus annuus
HanXRQChr15g0463351 Helianthus annuus
HanXRQChr15g0492651 Helianthus annuus
Haze_09753 Corylus avellana
Haze_09755 Corylus avellana
Haze_12731 Corylus avellana
Haze_12733 Corylus avellana
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla
Hma1.2p1_0036F.1_g023030 Hydrangea macrophylla
Hma1.2p1_0064F.1_g034743 Hydrangea macrophylla
Hma1.2p1_0133F.1_g060880 Hydrangea macrophylla
Hma1.2p1_0887F.1_g232783 Hydrangea macrophylla
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla
HPP92_020513 Vanilla planifolia
Hund01948 Selenicereus undatus
Lalb_Chr10g0091691 Lupinus albus
Lalb_Chr18g0050341 Lupinus albus
Lalb_Chr20g0115801 Lupinus albus
Lalb_Chr20g0115811 Lupinus albus
Lalb_Chr20g0115821 Lupinus albus
Lalb_Chr20g0116131 Lupinus albus
Lalb_Chr20g0116141 Lupinus albus
Lj1g0005996 Lotus japonicus
Lj6g0018007 Lotus japonicus
Lj6g0025719 Lotus japonicus
Lj8A174G68 Lonicera japonica
Lj8C131G11 Lonicera japonica
LjContig00272g0021661 Lotus japonicus
Lsat_1_v5_gn_5_124780 Lactuca sativa
Lsat_1_v5_gn_5_2821 Lactuca sativa
Lsat_1_v5_gn_7_113621 Lactuca sativa
Lsat_1_v5_gn_9_36141 Lactuca sativa
Lsat_1_v5_gn_9_90821 Lactuca sativa
Manes.03G135400 Manihot esculenta
Manes.03G135700 Manihot esculenta
Manes.13G064400 Manihot esculenta
Manes.15G065300 Manihot esculenta
Mapoly0008s0011 Marchantia polymorpha
Mapoly0040s0126 Marchantia polymorpha
Mapoly0058s0087 Marchantia polymorpha
MBI16_g41928_MAGBIO Magnolia biondii
MBI17_g17518_MAGBIO Magnolia biondii
MCO11G509 Micromonas commoda
MCO15G350 Micromonas commoda
MD03G1192100 Malus domestica
MD03G1192300 Malus domestica
MD05G1357400 Malus domestica
MD09G1117900 Malus domestica
MD10G1331400 Malus domestica
MD11G1208300 Malus domestica
MD11G1208800 Malus domestica
MD17G1109200 Malus domestica
Medtr3g055240 Medicago truncatula
Medtr5g094130 Medicago truncatula
Medtr7g024860 Medicago truncatula
Medtr7g024867 Medicago truncatula
MELO3C013122.2 Cucumis melo
MELO3C014155.2 Cucumis melo
MELO3C014358.2 Cucumis melo
MELO3C018874.2 Cucumis melo
MELO3C018875.2 Cucumis melo
MELO3C029573.2 Cucumis melo
Migut.H01785 Erythranthe guttata
Migut.M01699 Erythranthe guttata
Migut.M01701 Erythranthe guttata
MSTRG.13004 Avicennia marina
MSTRG.6966 Avicennia marina
Nitab4.5_0000130g0260 Nicotiana tabacum
Nitab4.5_0001049g0020 Nicotiana tabacum
Nitab4.5_0001160g0050 Nicotiana tabacum
Nitab4.5_0001393g0010 Nicotiana tabacum
Nitab4.5_0002313g0070 Nicotiana tabacum
Nitab4.5_0004445g0040 Nicotiana tabacum
Nitab4.5_0005874g0010 Nicotiana tabacum
Nitab4.5_0006248g0040 Nicotiana tabacum
Nitab4.5_0006519g0060 Nicotiana tabacum
Nitab4.5_0013812g0020 Nicotiana tabacum
Nn1g00139 Nelumbo nucifera
Nn2g11769 Nelumbo nucifera
Nn2g12773 Nelumbo nucifera
Nn5g26968 Nelumbo nucifera
Nn5g27077 Nelumbo nucifera
Oeu007990.1 Olea europaea
Oeu007991.1 Olea europaea
Oeu019637.1 Olea europaea
Oeu019638.1 Olea europaea
Os01g0510800 Oryza sativa ssp. japonica
Os04g0660600 Oryza sativa ssp. japonica
Peaxi162Scf00007g00125 Petunia axillaris
Peaxi162Scf00235g00825 Petunia axillaris
PGR031G2647 Punica granatum
PGR083G1538 Punica granatum
PGR083G1700 Punica granatum
PGR142G0662 Punica granatum
PGSC0003DMG400001082 Solanum tuberosum
PGSC0003DMG400014413 Solanum tuberosum
PGSC0003DMG400021620 Solanum tuberosum
PGSC0003DMG400022296 Solanum tuberosum
Phvul.006G049000 Phaseolus vulgaris
Phvul.006G049200 Phaseolus vulgaris
Phvul.008G012100 Phaseolus vulgaris
Potri.001G359400 Populus trichocarpa
Potri.001G359600 Populus trichocarpa
Potri.011G092600 Populus trichocarpa
Potri.014G161100 Populus trichocarpa
Pp3c11_2840 Physcomitrium patens
Pp3c1_1320 Physcomitrium patens
Pp3c27_1990 Physcomitrium patens
PRCOL_00006138 Prasinoderma coloniale
Prupe.3G206000 Prunus persica
Prupe.4G010800 Prunus persica
Prupe.4G224900 Prunus persica
Prupe.4G225100 Prunus persica
Psat2g010360 Pisum sativum
Psat3g179000 Pisum sativum
Psat5g174000 Pisum sativum
Psat5g175760 Pisum sativum
PSO210G6494 Papaver somniferum
PSO210G6816 Papaver somniferum
PSO302G0069 Papaver somniferum
PSO302G0157 Papaver somniferum
QL08p029804 Quercus lobata
RcHm_v2.0_Chr2g0157381 Rosa chinensis
RcHm_v2.0_Chr3g0484431 Rosa chinensis
RcHm_v2.0_Chr3g0484521 Rosa chinensis
RcHm_v2.0_Chr4g0417801 Rosa chinensis
RcHm_v2.0_Chr5g0001541 Rosa chinensis
RcHm_v2.0_Chr5g0041701 Rosa chinensis
RcHm_v2.0_Chr5g0041721 Rosa chinensis
RcHm_v2.0_Chr5g0042101 Rosa chinensis
RcHm_v2.0_Chr5g0042141 Rosa chinensis
RcHm_v2.0_Chr5g0042151 Rosa chinensis
RcHm_v2.0_Chr5g0042161 Rosa chinensis
RcHm_v2.0_Chr5g0042171 Rosa chinensis
Rhsim04G0046100 Rhododendron simsii
Rhsim04G0046200 Rhododendron simsii
Rhsim06G0224300 Rhododendron simsii
Sabra14G0122800 Salix brachista
Sabra16G0237100 Salix brachista
Sabra16G0237300 Salix brachista
SalBow8G1454 Salvia bowleyana
SalBow8G3768 Salvia bowleyana
Sc03g0008250 Simmondsia chinensis
Sc16g0005670 Simmondsia chinensis
Sed0003822 Sechium edule
Sed0022155 Sechium edule
Sed0022177 Sechium edule
Sed0022495 Sechium edule
Sed0024846 Sechium edule
SEGI_03077 Sequoiadendron giganteum
SEGI_08294 Sequoiadendron giganteum
SEGI_33144 Sequoiadendron giganteum
SEGI_41454 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38510 Striga asiatica
SGA_v2.0_scaffold171G38904 Striga asiatica
SGA_v2.0_scaffold478G52224 Striga asiatica
SHI09416 Sapria himalayana
SHI26567 Sapria himalayana
SMO116G0133 Selaginella moellendorffii
SMO139G0082 Selaginella moellendorffii
SMO197G0080 Selaginella moellendorffii
Solyc07g049710.3 Solanum lycopersicum
Solyc07g065040.3 Solanum lycopersicum
Solyc09g098440.4 Solanum lycopersicum
Solyc10g006100.3 Solanum lycopersicum
Solyc12g098720.3 Solanum lycopersicum
Sopen07g025310 Solanum pennellii
Sopen07g033250 Solanum pennellii
Sopen09g036370 Solanum pennellii
Sopen10g002050 Solanum pennellii
Sopen12g033480 Solanum pennellii
Sp1g03800 Schrenkiella parvula
Sp1g41900 Schrenkiella parvula
Sp6g17210 Schrenkiella parvula
Sp7g24710 Schrenkiella parvula
TAR626G1331 Trochodendron aralioides
TAR627G0748 Trochodendron aralioides
TAR629G2464 Trochodendron aralioides
THA.LOC104801015 Tarenaya hassleriana
THA.LOC104811636 Tarenaya hassleriana
THA.LOC104815714 Tarenaya hassleriana
THA.LOC104817690 Tarenaya hassleriana
Thecc.01G187000 Theobroma cacao
Thecc.07G026100 Theobroma cacao
Thecc.07G150700 Theobroma cacao
Thhalv10007291m.g Eutrema salsugineum
Thhalv10011427m.g Eutrema salsugineum
Thhalv10015209m.g Eutrema salsugineum
Thhalv10026732m.g Eutrema salsugineum
TPR.G16185 Trifolium pratense
TPR.G16320 Trifolium pratense
TPR.G18335 Trifolium pratense
TPR.G30643 Trifolium pratense
TPR.G32247 Trifolium pratense
TPR.G39481 Trifolium pratense
TPR.G40387 Trifolium pratense
TWI38G0624 Tripterygium wilfordii
TWI38G1361 Tripterygium wilfordii
TWI39G0531 Tripterygium wilfordii
TWI39G1192 Tripterygium wilfordii
TWI75G1639 Tripterygium wilfordii
unitig_8.g3633 Utricularia gibba
vmacro09377 Vaccinium macrocarpon
vmacro09683 Vaccinium macrocarpon
vmacro11580 Vaccinium macrocarpon
vmacro22992 Vaccinium macrocarpon
vmacro22994 Vaccinium macrocarpon
VMungo0540G2440 Vigna mungo
VMungo0720G3025 Vigna mungo
VMungo1080G0471 Vigna mungo
VMungo1215G0288 Vigna mungo
VMungo1383G1595 Vigna mungo
VMungo1383G2881 Vigna mungo
Zm00001eb269510 Zea mays
Zm00001eb398430 Zea mays

User provided reference genes

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