Gene: Sopen10g002050

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g002050
  • Transcript Identifier Sopen10g002050.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 902242-910274 : negative

Gene Family Information

  • ID HOM05D001534
  • #Genes/#Species 415/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g002050.1

Descriptions

  • Description Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 (TAFII59) | FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity | INVOLVED IN: pollen tube growth, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 , Histone-fold , TATA box binding protein associated factor (TAF) | BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT1G04950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0016251
IEA
InterProRNA polymerase II general transcription initiation factor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G04950

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000124
IEA
InterProSAGA complex
GO:0005669
IEA
InterProtranscription factor TFIID complex
GO:0046695
IEA
InterProSLIK (SAGA-like) complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004823 TATA box binding protein associated factor (TAF)
IPR009072 Histone-fold
IPR011442 TAF6, C-terminal HEAT repeat domain
IPR037796 Transcription initiation factor TFIID subunit 6
IPR016024 Armadillo-type fold
Mapman id Description
15.3.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF6