Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001534', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001534' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001534' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001534' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001534' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001534', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001534' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001534' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001534' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001534' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001534', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001534' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001534' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001534' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001534' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001534', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001534' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001534', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '415', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' ) ), 'genes' => array( 'A01p17980' => 'bna', 'A02p09760' => 'bna', 'A03p14150' => 'bna', 'A03p56890' => 'bna', 'A08p20740' => 'bna', 'A08p36620' => 'bna', 'A10p03380' => 'bna', 'Aa31LG1G20030' => 'aar', 'Aa31LG3G11260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1120' => 'aag', 'Actinidia00113' => 'ach', 'Actinidia00114' => 'ach', 'Actinidia10787' => 'ach', 'Actinidia10788' => 'ach', 'Actinidia35374' => 'ach', 'Ah.04g166260' => 'amhyb', 'Ah.14g082990' => 'amhyb', 'AL1G14680' => 'aly', 'AL1G64580' => 'aly', 'AL7G26120' => 'aly', 'AL8G30834' => 'aly', 'Aqoxy1G04095' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9Y4IVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8J7LR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8Z9ST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DAYY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4KFI0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FLZ4J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9VJMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV2YJP' => 'arhy', 'AT1G04950' => 'ath', 'AT4G26710' => 'ath', 'AT5G55290' => 'ath', 'ATR1101G058' => 'atr', 'Atru.chr2.3540' => 'acertr', 'Atru.chr2.3560' => 'acertr', 'Atru.chr6.3305' => 'acertr', 'Atru.chr6.3306' => 'acertr', 'AUR62015100' => 'cqu', 'AUR62015901' => 'cqu', 'AUR62017561' => 'cqu', 'AUR62020321' => 'cqu', 'BcaB03g12505' => 'bca', 'BcaB05g22197' => 'bca', 'BcaC03g14248' => 'bca', 'BcaC06g32730' => 'bca', 'BcaC07g36869' => 'bca', 'BcaC07g38243' => 'bca', 'BolC1t02210H' => 'bol', 'BolC2t07730H' => 'bol', 'BolC5t29092H' => 'bol', 'BolC7t45994H' => 'bol', 'BolC8t46965H' => 'bol', 'BolC8t48669H' => 'bol', 'BraA01t01753Z' => 'bra', 'BraA02t06040Z' => 'bra', 'BraA03t10716Z' => 'bra', 'BraA03t14757Z' => 'bra', 'BraA08t34028Z' => 'bra', 'BraA08t35564Z' => 'bra', 'BraA10t42614Z' => 'bra', 'C01p22800' => 'bna', 'C02p16290' => 'bna', 'C05p03100' => 'bna', 'C07p55180' => 'bna', 'C08p01620' => 'bna', 'C08p09920' => 'bna', 'CAN.G290.7' => 'can', 'CAN.G337.48' => 'can', 'CAN.G492.25' => 'can', 'CAN.G710.54' => 'can', 'CANSAT11G2616' => 'cansat', 'CANSAT35G0060' => 'cansat', 'CANSAT56G4167' => 'cansat', 'CANSAT78G2243' => 'cansat', 'CARHR004360' => 'chi', 'CARHR046040' => 'chi', 'CARHR234330' => 'chi', 'CARHR268660' => 'chi', 'Carub.0001s0419' => 'cru', 'Carub.0001s4481' => 'cru', 'Carub.0007s1413' => 'cru', 'Carub.0008s1562' => 'cru', 'Ca_07287_v3' => 'car', 'Ca_14770_v3' => 'car', 'CBR_g41488' => 'cbr', 'CBR_g41757' => 'cbr', 'CBR_g74631' => 'cbr', 'Cc05_g02930' => 'ccan', 'Cc05_g14400' => 'ccan', 'Cc05_g14430' => 'ccan', 'CDE04G2962' => 'cde', 'CDE05G1212' => 'cde', 'CDE06G1567' => 'cde', 'CDE11G0835' => 'cde', 'Cfa014286' => 'cfa', 'Cfa020269' => 'cfa', 'Cfa023649' => 'cfa', 'Ciclev10007970m.g' => 'ccl', 'Ciclev10010112m.g' => 'ccl', 'Ciclev10014827m.g' => 'ccl', 'CiPaw.03G275100' => 'cil', 'CiPaw.11G195500' => 'cil', 'CiPaw.11G195700' => 'cil', 'CiPaw.12G134400' => 'cil', 'ClCG00G004150' => 'cla', 'ClCG02G002420' => 'cla', 'ClCG09G011120' => 'cla', 'ClCG10G004920' => 'cla', 'COL.COLO4_09746' => 'col', 'COL.COLO4_31994' => 'col', 'Cpa.g.sc12.231' => 'cpa', 'Cpa.g.sc12.241' => 'cpa', 'Cpa.g.sc132.56' => 'cpa', 'Cpa.g.sc132.59' => 'cpa', 'Cre07.g349950' => 'cre', 'CsaV3_1G040420' => 'csa', 'CsaV3_3G004570' => 'csa', 'CsaV3_6G037540' => 'csa', 'CsaV3_7G003000' => 'csa', 'CSS0020811' => 'camsi', 'CSS0039282' => 'camsi', 'CSS0048655' => 'camsi', 'CSS0049003' => 'camsi', 'CSS0050069' => 'camsi', 'DCAR_002221' => 'dca', 'DCAR_016645' => 'dca', 'DCAR_019732' => 'dca', 'DCAR_022596' => 'dca', 'Dinv08700' => 'din', 'Dinv40801' => 'din', 'Duzib133G0537' => 'dzi', 'Duzib170G0444' => 'dzi', 'Duzib213G0269' => 'dzi', 'Duzib213G1078' => 'dzi', 'Duzib268G1739' => 'dzi', 'ECA234G4726' => 'eca', 'ECA236G2991' => 'eca', 'ECA246G1860' => 'eca', 'EL10Ac4g07675' => 'bvu', 'EL10Ac9g20750' => 'bvu', 'EL10Ac9g22782' => 'bvu', 'Eucgr.F00645' => 'egr', 'Eucgr.F00646' => 'egr', 'Eucgr.F03511' => 'egr', 'Eucgr.K00716' => 'egr', 'FAN02G0816' => 'fan', 'FAN05G0005' => 'fan', 'FAN09G2342' => 'fan', 'FAN11G0198' => 'fan', 'FAN11G0656' => 'fan', 'FAN14G2718' => 'fan', 'FAN16G1322' => 'fan', 'FAN16G3611' => 'fan', 'FAN21G0767' => 'fan', 'FAN21G0845' => 'fan', 'FAN21G3843' => 'fan', 'FAN25G0400' => 'fan', 'FAN25G2799' => 'fan', 'FAN25G3175' => 'fan', 'FvH4_3g01010' => 'fve', 'FvH4_3g23640' => 'fve', 'FvH4_3g23660' => 'fve', 'FvH4_6g41670' => 'fve', 'Glyma.02G092400' => 'gma', 'Glyma.02G295900' => 'gma', 'Glyma.08G322700' => 'gma', 'Glyma.08G322900' => 'gma', 'Glyma.14G017500' => 'gma', 'Glyma.18G089300' => 'gma', 'Glyma.18G089500' => 'gma', 'Glyma.18G290200' => 'gma', 'Gohir.A04G011400' => 'ghi', 'Gohir.A04G011500' => 'ghi', 'Gohir.A07G085500' => 'ghi', 'Gohir.A08G024400' => 'ghi', 'Gohir.A13G136100' => 'ghi', 'Gohir.D05G375100' => 'ghi', 'Gohir.D05G375350' => 'ghi', 'Gohir.D05G375500' => 'ghi', 'Gohir.D05G375600' => 'ghi', 'Gohir.D07G090900' => 'ghi', 'Gohir.D08G034900' => 'ghi', 'Gohir.D13G140400' => 'ghi', 'Gorai.001G097400' => 'gra', 'Gorai.004G032800' => 'gra', 'Gorai.009G444000' => 'gra', 'Gorai.009G444100' => 'gra', 'Gorai.009G444300' => 'gra', 'Gorai.013G157000' => 'gra', 'GSVIVG01003343001' => 'vvi', 'GSVIVG01003348001' => 'vvi', 'GSVIVG01030390001' => 'vvi', 'GSVIVG01030396001' => 'vvi', 'GSVIVG01030398001' => 'vvi', 'GSVIVG01037737001' => 'vvi', 'GSVIVG01037739001' => 'vvi', 'HanXRQChr03g0076901' => 'han', 'HanXRQChr05g0159691' => 'han', 'HanXRQChr10g0306291' => 'han', 'HanXRQChr15g0463351' => 'han', 'HanXRQChr15g0492651' => 'han', 'Haze_09753' => 'cav', 'Haze_09755' => 'cav', 'Haze_12731' => 'cav', 'Haze_12733' => 'cav', 'Hma1.2p1_0036F.1_g023010' => 'hma', 'Hma1.2p1_0036F.1_g023030' => 'hma', 'Hma1.2p1_0064F.1_g034743' => 'hma', 'Hma1.2p1_0133F.1_g060880' => 'hma', 'Hma1.2p1_0887F.1_g232783' => 'hma', 'Hma1.2p1_3177F.1_g333625' => 'hma', 'HPP92_020513' => 'vpl', 'Hund01948' => 'sun', 'Lalb_Chr10g0091691' => 'lal', 'Lalb_Chr18g0050341' => 'lal', 'Lalb_Chr20g0115801' => 'lal', 'Lalb_Chr20g0115811' => 'lal', 'Lalb_Chr20g0115821' => 'lal', 'Lalb_Chr20g0116131' => 'lal', 'Lalb_Chr20g0116141' => 'lal', 'Lj1g0005996' => 'lja', 'Lj6g0018007' => 'lja', 'Lj6g0025719' => 'lja', 'Lj8A174G68' => 'lonja', 'Lj8C131G11' => 'lonja', 'LjContig00272g0021661' => 'lja', 'Lsat_1_v5_gn_5_124780' => 'lsa', 'Lsat_1_v5_gn_5_2821' => 'lsa', 'Lsat_1_v5_gn_7_113621' => 'lsa', 'Lsat_1_v5_gn_9_36141' => 'lsa', 'Lsat_1_v5_gn_9_90821' => 'lsa', 'Manes.03G135400' => 'mes', 'Manes.03G135700' => 'mes', 'Manes.13G064400' => 'mes', 'Manes.15G065300' => 'mes', 'Mapoly0008s0011' => 'mpo', 'Mapoly0040s0126' => 'mpo', 'Mapoly0058s0087' => 'mpo', 'MBI16_g41928_MAGBIO' => 'mbi', 'MBI17_g17518_MAGBIO' => 'mbi', 'MCO11G509' => 'mco', 'MCO15G350' => 'mco', 'MD03G1192100' => 'mdo', 'MD03G1192300' => 'mdo', 'MD05G1357400' => 'mdo', 'MD09G1117900' => 'mdo', 'MD10G1331400' => 'mdo', 'MD11G1208300' => 'mdo', 'MD11G1208800' => 'mdo', 'MD17G1109200' => 'mdo', 'Medtr3g055240' => 'mtr', 'Medtr5g094130' => 'mtr', 'Medtr7g024860' => 'mtr', 'Medtr7g024867' => 'mtr', 'MELO3C013122.2' => 'cme', 'MELO3C014155.2' => 'cme', 'MELO3C014358.2' => 'cme', 'MELO3C018874.2' => 'cme', 'MELO3C018875.2' => 'cme', 'MELO3C029573.2' => 'cme', 'Migut.H01785' => 'egut', 'Migut.M01699' => 'egut', 'Migut.M01701' => 'egut', 'MSTRG.13004' => 'ama', 'MSTRG.6966' => 'ama', 'Nitab4.5_0000130g0260' => 'nta', 'Nitab4.5_0001049g0020' => 'nta', 'Nitab4.5_0001160g0050' => 'nta', 'Nitab4.5_0001393g0010' => 'nta', 'Nitab4.5_0002313g0070' => 'nta', 'Nitab4.5_0004445g0040' => 'nta', 'Nitab4.5_0005874g0010' => 'nta', 'Nitab4.5_0006248g0040' => 'nta', 'Nitab4.5_0006519g0060' => 'nta', 'Nitab4.5_0013812g0020' => 'nta', 'Nn1g00139' => 'nnu', 'Nn2g11769' => 'nnu', 'Nn2g12773' => 'nnu', 'Nn5g26968' => 'nnu', 'Nn5g27077' => 'nnu', 'Oeu007990.1' => 'oeu', 'Oeu007991.1' => 'oeu', 'Oeu019637.1' => 'oeu', 'Oeu019638.1' => 'oeu', 'Os01g0510800' => 'osa', 'Os04g0660600' => 'osa', 'Peaxi162Scf00007g00125' => 'pax', 'Peaxi162Scf00235g00825' => 'pax', 'PGR031G2647' => 'pgr', 'PGR083G1538' => 'pgr', 'PGR083G1700' => 'pgr', 'PGR142G0662' => 'pgr', 'PGSC0003DMG400001082' => 'stu', 'PGSC0003DMG400014413' => 'stu', 'PGSC0003DMG400021620' => 'stu', 'PGSC0003DMG400022296' => 'stu', 'Phvul.006G049000' => 'pvu', 'Phvul.006G049200' => 'pvu', 'Phvul.008G012100' => 'pvu', 'Potri.001G359400' => 'ptr', 'Potri.001G359600' => 'ptr', 'Potri.011G092600' => 'ptr', 'Potri.014G161100' => 'ptr', 'Pp3c11_2840' => 'ppa', 'Pp3c1_1320' => 'ppa', 'Pp3c27_1990' => 'ppa', 'PRCOL_00006138' => 'pco', 'Prupe.3G206000' => 'ppe', 'Prupe.4G010800' => 'ppe', 'Prupe.4G224900' => 'ppe', 'Prupe.4G225100' => 'ppe', 'Psat2g010360' => 'psa', 'Psat3g179000' => 'psa', 'Psat5g174000' => 'psa', 'Psat5g175760' => 'psa', 'PSO210G6494' => 'pso', 'PSO210G6816' => 'pso', 'PSO302G0069' => 'pso', 'PSO302G0157' => 'pso', 'QL08p029804' => 'qlo', 'RcHm_v2.0_Chr2g0157381' => 'rch', 'RcHm_v2.0_Chr3g0484431' => 'rch', 'RcHm_v2.0_Chr3g0484521' => 'rch', 'RcHm_v2.0_Chr4g0417801' => 'rch', 'RcHm_v2.0_Chr5g0001541' => 'rch', 'RcHm_v2.0_Chr5g0041701' => 'rch', 'RcHm_v2.0_Chr5g0041721' => 'rch', 'RcHm_v2.0_Chr5g0042101' => 'rch', 'RcHm_v2.0_Chr5g0042141' => 'rch', 'RcHm_v2.0_Chr5g0042151' => 'rch', 'RcHm_v2.0_Chr5g0042161' => 'rch', 'RcHm_v2.0_Chr5g0042171' => 'rch', 'Rhsim04G0046100' => 'rsi', 'Rhsim04G0046200' => 'rsi', 'Rhsim06G0224300' => 'rsi', 'Sabra14G0122800' => 'sbr', 'Sabra16G0237100' => 'sbr', 'Sabra16G0237300' => 'sbr', 'SalBow8G1454' => 'sbo', 'SalBow8G3768' => 'sbo', 'Sc03g0008250' => 'sci', 'Sc16g0005670' => 'sci', 'Sed0003822' => 'sed', 'Sed0022155' => 'sed', 'Sed0022177' => 'sed', 'Sed0022495' => 'sed', 'Sed0024846' => 'sed', 'SEGI_03077' => 'sgi', 'SEGI_08294' => 'sgi', 'SEGI_33144' => 'sgi', 'SEGI_41454' => 'sgi', 'SGA_v2.0_scaffold168G38510' => 'sas', 'SGA_v2.0_scaffold171G38904' => 'sas', 'SGA_v2.0_scaffold478G52224' => 'sas', 'SHI09416' => 'shi', 'SHI26567' => 'shi', 'SMO116G0133' => 'smo', 'SMO139G0082' => 'smo', 'SMO197G0080' => 'smo', 'Solyc07g049710.3' => 'sly', 'Solyc07g065040.3' => 'sly', 'Solyc09g098440.4' => 'sly', 'Solyc10g006100.3' => 'sly', 'Solyc12g098720.3' => 'sly', 'Sopen07g025310' => 'spe', 'Sopen07g033250' => 'spe', 'Sopen09g036370' => 'spe', 'Sopen10g002050' => 'spe', 'Sopen12g033480' => 'spe', 'Sp1g03800' => 'spa', 'Sp1g41900' => 'spa', 'Sp6g17210' => 'spa', 'Sp7g24710' => 'spa', 'TAR626G1331' => 'tar', 'TAR627G0748' => 'tar', 'TAR629G2464' => 'tar', 'THA.LOC104801015' => 'tha', 'THA.LOC104811636' => 'tha', 'THA.LOC104815714' => 'tha', 'THA.LOC104817690' => 'tha', 'Thecc.01G187000' => 'tca', 'Thecc.07G026100' => 'tca', 'Thecc.07G150700' => 'tca', 'Thhalv10007291m.g' => 'esa', 'Thhalv10011427m.g' => 'esa', 'Thhalv10015209m.g' => 'esa', 'Thhalv10026732m.g' => 'esa', 'TPR.G16185' => 'tpr', 'TPR.G16320' => 'tpr', 'TPR.G18335' => 'tpr', 'TPR.G30643' => 'tpr', 'TPR.G32247' => 'tpr', 'TPR.G39481' => 'tpr', 'TPR.G40387' => 'tpr', 'TWI38G0624' => 'twi', 'TWI38G1361' => 'twi', 'TWI39G0531' => 'twi', 'TWI39G1192' => 'twi', 'TWI75G1639' => 'twi', 'unitig_8.g3633' => 'ugi', 'vmacro09377' => 'vma', 'vmacro09683' => 'vma', 'vmacro11580' => 'vma', 'vmacro22992' => 'vma', 'vmacro22994' => 'vma', 'VMungo0540G2440' => 'vmu', 'VMungo0720G3025' => 'vmu', 'VMungo1080G0471' => 'vmu', 'VMungo1215G0288' => 'vmu', 'VMungo1383G1595' => 'vmu', 'VMungo1383G2881' => 'vmu', 'Zm00001eb269510' => 'zma', 'Zm00001eb398430' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001534' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001534' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001534' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001534' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151