Gene: COL.COLO4_09746

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_09746
  • Transcript Identifier COL.rna8541
  • Gene Type Coding gene
  • Location AWUE01014267.1 : 73683-78609 : negative

Gene Family Information

  • ID HOM05D001534
  • #Genes/#Species 415/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna8541
  • GenBank OMP04339.1
  • id gene9718
  • gene_name COLO4_09746
  • uniprot A0A1R3KBC1

Descriptions

  • Description TATA box binding protein associated factor (TAF)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:1902600
IEA
GOA Databaseproton transmembrane transport
GO:1902600
IEA
InterProproton transmembrane transport
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006811
IEA
GOA Databaseion transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016251
IEA
GOA DatabaseRNA polymerase II general transcription initiation factor activity
GO:0016251
IEA
InterProRNA polymerase II general transcription initiation factor activity
GO:0015078
IEA
GOA Databaseproton transmembrane transporter activity
GO:0015078
IEA
InterProproton transmembrane transporter activity
GO:0046982
IEA
GOA Databaseprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT4G26710
GO:0046695
IEA
GOA DatabaseSLIK (SAGA-like) complex
GO:0046695
IEA
InterProSLIK (SAGA-like) complex
GO:0005669
IEA
GOA Databasetranscription factor TFIID complex
GO:0005669
IEA
InterProtranscription factor TFIID complex
GO:0000124
IEA
GOA DatabaseSAGA complex
GO:0000124
IEA
InterProSAGA complex
GO:0033179
IEA
GOA Databaseproton-transporting V-type ATPase, V0 domain
GO:0033179
IEA
InterProproton-transporting V-type ATPase, V0 domain
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004823 TATA box binding protein associated factor (TAF)
IPR009072 Histone-fold
IPR016024 Armadillo-type fold
IPR008389 ATPase, V0 complex, subunit e1/e2
IPR011442 TAF6, C-terminal HEAT repeat domain
IPR037796 Transcription initiation factor TFIID subunit 6
Mapman id Description
15.3.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF6
24.1.1.1.4 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit e