Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21280 Brassica napus
A02p25100 Brassica napus
A03p25900 Brassica napus
A09p02420 Brassica napus
A10p01990 Brassica napus
A10p31540 Brassica napus
Aa31LG10G5840 Aethionema arabicum
Aa31LG1G28560 Aethionema arabicum
Aa31LG1G28600 Aethionema arabicum
Aa31LG1G9130 Aethionema arabicum
Aa31LG1G9140 Aethionema arabicum
Aa31LG5G2630 Aethionema arabicum
Actinidia06381 Actinidia chinensis
Actinidia13351 Actinidia chinensis
Actinidia14253 Actinidia chinensis
Actinidia19074 Actinidia chinensis
Actinidia19075 Actinidia chinensis
Actinidia21082 Actinidia chinensis
Actinidia21385 Actinidia chinensis
Actinidia24858 Actinidia chinensis
Ah.08g212740 Amaranthus hybridus
Ah.10g026360 Amaranthus hybridus
Ah.11g049000 Amaranthus hybridus
Ah.13g071430 Amaranthus hybridus
Ah.15g093640 Amaranthus hybridus
AL1G12960 Arabidopsis lyrata
AL4G46870 Arabidopsis lyrata
AL6G49840 Arabidopsis lyrata
Aqoxy2G02692 Aquilegia oxysepala
Aqoxy5G00639 Aquilegia oxysepala
Aqoxy6G02578 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.26UA7Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4U5A0V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q7HD44 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R0SDX6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TK9WZW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X1A7R1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y87QGW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZU7UIY Arachis hypogaea
AT1G03457 Arabidopsis thaliana
AT2G47310 Arabidopsis thaliana
AT4G03110 Arabidopsis thaliana
AT4G16280 Arabidopsis thaliana
ATR0706G287 Amborella trichopoda
ATR0800G063 Amborella trichopoda
Atru.chr4.3048 Acer truncatum
Atru.chr4.3049 Acer truncatum
Atru.chr5.1290 Acer truncatum
Atru.chr5.964 Acer truncatum
AUR62011774 Chenopodium quinoa
AUR62016232 Chenopodium quinoa
AUR62024617 Chenopodium quinoa
AUR62034606 Chenopodium quinoa
AUR62036665 Chenopodium quinoa
AUR62039258 Chenopodium quinoa
BcaB01g01941 Brassica carinata
BcaB01g01981 Brassica carinata
BcaB01g03173 Brassica carinata
BcaB02g06931 Brassica carinata
BcaB05g23687 Brassica carinata
BcaB06g29453 Brassica carinata
BcaB06g29474 Brassica carinata
BcaC01g05037 Brassica carinata
BcaC03g16207 Brassica carinata
BcaC05g24528 Brassica carinata
BcaC09g50326 Brassica carinata
BcaNung00209 Brassica carinata
BolC1t02603H Brassica oleracea
BolC2t10010H Brassica oleracea
BolC3t15441H Brassica oleracea
BolC5t28973H Brassica oleracea
BolC9t53182H Brassica oleracea
BraA01t02035Z Brassica rapa
BraA02t07498Z Brassica rapa
BraA03t11806Z Brassica rapa
BraA09t35889Z Brassica rapa
BraA10t42472Z Brassica rapa
C01p26620 Brassica napus
C02p39830 Brassica napus
C03p30890 Brassica napus
C05p01940 Brassica napus
C08p52760 Brassica napus
C09p02520 Brassica napus
CAN.G114.5 Capsicum annuum
CAN.G1227.15 Capsicum annuum
CANSAT11G1739 Cannabis sativa
CANSAT25G1440 Cannabis sativa
CANSAT25G3309 Cannabis sativa
CARHR002830 Cardamine hirsuta
CARHR142700 Cardamine hirsuta
CARHR222670 Cardamine hirsuta
CARHR251540 Cardamine hirsuta
Carub.0001s0259 Capsella rubella
Carub.0004s3003 Capsella rubella
Carub.0006s3395 Capsella rubella
Carub.0007s2523 Capsella rubella
Ca_09108_v3 Cicer arietinum L.
Ca_09222_v3 Cicer arietinum L.
Ca_21427_v3 Cicer arietinum L.
CBR_g38484 Chara braunii
CBR_g46786 Chara braunii
Cc01_g20140 Coffea canephora
Cc01_g21610 Coffea canephora
Cc03_g00650 Coffea canephora
CDE02G3065 Ceratophyllum demersum
CDE02G3766 Ceratophyllum demersum
CDE05G1131 Ceratophyllum demersum
CDE05G1620 Ceratophyllum demersum
CDE05G2542 Ceratophyllum demersum
CDE05G3400 Ceratophyllum demersum
CDE11G0383 Ceratophyllum demersum
Cfa005762 Carpinus fangiana
Cfa015287 Carpinus fangiana
Ciclev10006289m.g Citrus clementina
Ciclev10006924m.g Citrus clementina
Ciclev10019644m.g Citrus clementina
Ciclev10020206m.g Citrus clementina
CiPaw.02G073400 Carya illinoinensis
CiPaw.07G099000 Carya illinoinensis
CiPaw.07G119600 Carya illinoinensis
ClCG06G004470 Citrullus lanatus
ClCG09G006550 Citrullus lanatus
ClCG10G011580 Citrullus lanatus
COL.COLO4_08038 Corchorus olitorius
COL.COLO4_23202 Corchorus olitorius
COL.COLO4_34585 Corchorus olitorius
Cpa.g.sc18.84 Carica papaya
Cpa.g.sc9.154 Carica papaya
Cpa.g.sc9.31 Carica papaya
Cpa.g.sc9.34 Carica papaya
Cre03.g162750 Chlamydomonas reinhardtii
Cre03.g177200 Chlamydomonas reinhardtii
Cre06.g290450 Chlamydomonas reinhardtii
CsaV3_3G026590 Cucumis sativus L.
CsaV3_6G028500 Cucumis sativus L.
CsaV3_7G028320 Cucumis sativus L.
CsaV3_UNG230160 Cucumis sativus L.
CSS0003285 Camellia sinensis var. sinensis
CSS0007877 Camellia sinensis var. sinensis
CSS0008121 Camellia sinensis var. sinensis
CSS0010886 Camellia sinensis var. sinensis
CSS0022274 Camellia sinensis var. sinensis
CSS0023329 Camellia sinensis var. sinensis
CSS0023330 Camellia sinensis var. sinensis
CSS0029739 Camellia sinensis var. sinensis
CSS0029961 Camellia sinensis var. sinensis
DCAR_002884 Daucus carota
DCAR_012432 Daucus carota
DCAR_018366 Daucus carota
DCAR_026991 Daucus carota
DCAR_030964 Daucus carota
Dinv10122 Davidia involucrata
Dinv11289 Davidia involucrata
Dinv15145 Davidia involucrata
Dinv32986 Davidia involucrata
Dinv33135 Davidia involucrata
Dinv44266 Davidia involucrata
Duzib138G0012 Durio zibethinus
Duzib138G1408 Durio zibethinus
Duzib151G0245 Durio zibethinus
Duzib211G0254 Durio zibethinus
Duzib212G0382 Durio zibethinus
ECA233G5661 Erigeron canadensis
ECA236G2924 Erigeron canadensis
ECA248G0504 Erigeron canadensis
EL10Ac3g05531 Beta vulgaris
EL10Ac4g08829 Beta vulgaris
EL10Ac7g17361 Beta vulgaris
EL10As5g23564 Beta vulgaris
Eucgr.H00995 Eucalyptus grandis
Eucgr.H01216 Eucalyptus grandis
Eucgr.H04064 Eucalyptus grandis
FAN07G0514 Fragaria x ananassa
FAN12G3734 Fragaria x ananassa
FAN15G1856 Fragaria x ananassa
FAN19G1491 Fragaria x ananassa
FAN20G2774 Fragaria x ananassa
FAN23G1993 Fragaria x ananassa
FAN24G0914 Fragaria x ananassa
FAN26G1997 Fragaria x ananassa
FAN27G2946 Fragaria x ananassa
FAN28G1152 Fragaria x ananassa
FAN28G1530 Fragaria x ananassa
FvH4_1g26970 Fragaria vesca
FvH4_2g24620 Fragaria vesca
FvH4_4g20210 Fragaria vesca
Glyma.02G152000 Glycine max
Glyma.03G208500 Glycine max
Glyma.03G220900 Glycine max
Glyma.07G237900 Glycine max
Glyma.10G022200 Glycine max
Glyma.17G035500 Glycine max
Glyma.19G205700 Glycine max
Glyma.19G217900 Glycine max
Gohir.A07G129200 Gossypium hirsutum
Gohir.A10G173900 Gossypium hirsutum
Gohir.A11G118500 Gossypium hirsutum
Gohir.A12G008400 Gossypium hirsutum
Gohir.D07G133600 Gossypium hirsutum
Gohir.D10G180400 Gossypium hirsutum
Gohir.D11G123400 Gossypium hirsutum
Gohir.D12G008100 Gossypium hirsutum
Gorai.001G144900 Gossypium raimondii
Gorai.007G132300 Gossypium raimondii
Gorai.008G007900 Gossypium raimondii
Gorai.011G201900 Gossypium raimondii
GSVIVG01011013001 Vitis vinifera
GSVIVG01028149001 Vitis vinifera
GSVIVG01034825001 Vitis vinifera
GSVIVG01034966001 Vitis vinifera
HanXRQChr01g0002791 Helianthus annuus
HanXRQChr01g0007141 Helianthus annuus
HanXRQChr04g0106241 Helianthus annuus
HanXRQChr04g0117831 Helianthus annuus
HanXRQChr13g0395241 Helianthus annuus
HanXRQChr13g0425981 Helianthus annuus
HanXRQChr14g0427731 Helianthus annuus
Haze_04802 Corylus avellana
Hma1.2p1_0078F.1_g039900 Hydrangea macrophylla
Hma1.2p1_0399F.1_g144250 Hydrangea macrophylla
Hma1.2p1_0408F.1_g146520 Hydrangea macrophylla
HPP92_001328 Vanilla planifolia
HPP92_013692 Vanilla planifolia
HPP92_020088 Vanilla planifolia
HPP92_020089 Vanilla planifolia
Hund02945 Selenicereus undatus
Hund05373 Selenicereus undatus
Hund11986 Selenicereus undatus
Hund18027 Selenicereus undatus
Lalb_Chr04g0259671 Lupinus albus
Lalb_Chr07g0181991 Lupinus albus
Lalb_Chr13g0298581 Lupinus albus
Lalb_Chr15g0077991 Lupinus albus
Lalb_Chr15g0078811 Lupinus albus
Lalb_Chr18g0047531 Lupinus albus
Lj1A40G69 Lonicera japonica
Lj1g0014560 Lotus japonicus
Lj1g0019373 Lotus japonicus
Lj1g0027953 Lotus japonicus
Lj2A1184G70 Lonicera japonica
Lj4g0013859 Lotus japonicus
Lj6A693T65 Lonicera japonica
Lsat_1_v5_gn_5_188661 Lactuca sativa
Lsat_1_v5_gn_6_261 Lactuca sativa
Lsat_1_v5_gn_8_55081 Lactuca sativa
Manes.01G213000 Manihot esculenta
Manes.01G230100 Manihot esculenta
Manes.03G206500 Manihot esculenta
Manes.05G069100 Manihot esculenta
Manes.15G001500 Manihot esculenta
Mapoly0009s0245 Marchantia polymorpha
Mapoly0032s0049 Marchantia polymorpha
MBI15_g36236_MAGBIO Magnolia biondii
MBI18_g21584_MAGBIO Magnolia biondii
MD03G1275000 Malus domestica
MD09G1285500 Malus domestica
MD11G1297000 Malus domestica
MD13G1150500 Malus domestica
MD16G1150700 Malus domestica
Medtr4g122650 Medicago truncatula
Medtr7g107580 Medicago truncatula
Medtr7g109810 Medicago truncatula
MELO3C012931.2 Cucumis melo
MELO3C015889.2 Cucumis melo
MELO3C021258.2 Cucumis melo
Migut.D00063 Erythranthe guttata
Migut.D00234 Erythranthe guttata
Migut.G00044 Erythranthe guttata
Migut.N02120 Erythranthe guttata
MSTRG.12591 Avicennia marina
MSTRG.17424 Avicennia marina
MSTRG.18086 Avicennia marina
MSTRG.18197 Avicennia marina
MSTRG.21704 Avicennia marina
Nitab4.5_0000177g0070 Nicotiana tabacum
Nitab4.5_0000712g0180 Nicotiana tabacum
Nitab4.5_0001651g0030 Nicotiana tabacum
Nitab4.5_0002093g0140 Nicotiana tabacum
Nitab4.5_0002225g0090 Nicotiana tabacum
Nitab4.5_0008494g0010 Nicotiana tabacum
Nitab4.5_0009057g0010 Nicotiana tabacum
Nitab4.5_0009496g0040 Nicotiana tabacum
Nn3g21251 Nelumbo nucifera
Nn3g21739 Nelumbo nucifera
Nn4g25557 Nelumbo nucifera
Nn4g26067 Nelumbo nucifera
Nn5g28488 Nelumbo nucifera
Nn5g28684 Nelumbo nucifera
Oeu001158.2 Olea europaea
Oeu002703.4 Olea europaea
Oeu026830.1 Olea europaea
Oeu027342.1 Olea europaea
Oeu049926.1 Olea europaea
Os01g0938200 Oryza sativa ssp. japonica
Os05g0373400 Oryza sativa ssp. japonica
Os07g0663300 Oryza sativa ssp. japonica
Os09g0123200 Oryza sativa ssp. japonica
Peaxi162Scf00017g00315 Petunia axillaris
Peaxi162Scf00102g01065 Petunia axillaris
Peaxi162Scf00228g00515 Petunia axillaris
Peaxi162Scf01039g00135 Petunia axillaris
PGR004G1092 Punica granatum
PGR083G2330 Punica granatum
PGR119G1647 Punica granatum
PGSC0003DMG400016844 Solanum tuberosum
PGSC0003DMG401024041 Solanum tuberosum
Phvul.001G201600 Phaseolus vulgaris
Phvul.001G214500 Phaseolus vulgaris
Phvul.003G116400 Phaseolus vulgaris
Phvul.007G166900 Phaseolus vulgaris
Potri.002G192900 Populus trichocarpa
Potri.002G214000 Populus trichocarpa
Potri.010G147900 Populus trichocarpa
Potri.014G135540 Populus trichocarpa
Pp3c13_15440 Physcomitrium patens
Pp3c19_8230 Physcomitrium patens
Pp3c22_7290 Physcomitrium patens
Pp3c3_21560 Physcomitrium patens
Prupe.1G114600 Prunus persica
Prupe.3G008500 Prunus persica
Prupe.8G251600 Prunus persica
Psat3g019280 Pisum sativum
Psat3g025160 Pisum sativum
Psat4g021880 Pisum sativum
PSO170G0659 Papaver somniferum
PSO210G4988 Papaver somniferum
PSO421G0756 Papaver somniferum
PSO673G0001 Papaver somniferum
PSO673G0031 Papaver somniferum
PSO724G0940 Papaver somniferum
PSO832G1685 Papaver somniferum
QL06p012773 Quercus lobata
QL06p012780 Quercus lobata
QL12p019026 Quercus lobata
QL12p023826 Quercus lobata
RcHm_v2.0_Chr3g0487191 Rosa chinensis
RcHm_v2.0_Chr4g0425821 Rosa chinensis
RcHm_v2.0_Chr6g0292451 Rosa chinensis
Rhsim01G0279700 Rhododendron simsii
Rhsim13G0003200 Rhododendron simsii
Rhsim13G0017900 Rhododendron simsii
Sabra02G0149500 Salix brachista
Sabra02G0163000 Salix brachista
Sabra10G0114000 Salix brachista
Sabra14G0087600 Salix brachista
Sabra14G0101600 Salix brachista
SalBow3G2387 Salvia bowleyana
Sc17g0000320 Simmondsia chinensis
Sc17g0003620 Simmondsia chinensis
Sc25g0003200 Simmondsia chinensis
Sed0003150 Sechium edule
Sed0023984 Sechium edule
Sed0024600 Sechium edule
Sed0024941 Sechium edule
SEGI_00512 Sequoiadendron giganteum
SEGI_05089 Sequoiadendron giganteum
SEGI_05122 Sequoiadendron giganteum
SEGI_14995 Sequoiadendron giganteum
SEGI_15924 Sequoiadendron giganteum
SEGI_18605 Sequoiadendron giganteum
SEGI_21142 Sequoiadendron giganteum
SEGI_25400 Sequoiadendron giganteum
SEGI_37032 Sequoiadendron giganteum
SGA_v2.0_scaffold107G30742 Striga asiatica
SGA_v2.0_scaffold11G05762 Striga asiatica
SGA_v2.0_scaffold157G37332 Striga asiatica
SGA_v2.0_scaffold172G39058 Striga asiatica
SGA_v2.0_scaffold376G50291 Striga asiatica
SGA_v2.0_scaffold64G22100 Striga asiatica
SHI00113 Sapria himalayana
SHI00114 Sapria himalayana
SMO140G0040 Selaginella moellendorffii
SMO244G0092 Selaginella moellendorffii
Solyc01g058450.3 Solanum lycopersicum
Solyc08g007370.3 Solanum lycopersicum
Solyc09g074360.4 Solanum lycopersicum
Sopen01g024010 Solanum pennellii
Sopen08g003310 Solanum pennellii
Sopen09g029200 Solanum pennellii
Sp1g02420 Schrenkiella parvula
Sp4g29260 Schrenkiella parvula
Sp6g03140 Schrenkiella parvula
Sp7g14810 Schrenkiella parvula
TAR365G0942 Trochodendron aralioides
TAR365G0946 Trochodendron aralioides
TAR636G2324 Trochodendron aralioides
TAR636G2795 Trochodendron aralioides
TAR636G3049 Trochodendron aralioides
TAR636G3165 Trochodendron aralioides
THA.LOC104801201 Tarenaya hassleriana
THA.LOC104820311 Tarenaya hassleriana
THA.LOC104821799 Tarenaya hassleriana
THA.LOC104826010 Tarenaya hassleriana
Thecc.01G289500 Theobroma cacao
Thecc.01G316900 Theobroma cacao
Thecc.04G304200 Theobroma cacao
Thhalv10001438m.g Eutrema salsugineum
Thhalv10007707m.g Eutrema salsugineum
Thhalv10024390m.g Eutrema salsugineum
Thhalv10028663m.g Eutrema salsugineum
Thhalv10028982m.g Eutrema salsugineum
TPR.G25425 Trifolium pratense
TPR.G32281 Trifolium pratense
TPR.G4031 Trifolium pratense
TPR.G8457 Trifolium pratense
TWI23G1167 Tripterygium wilfordii
TWI36G1783 Tripterygium wilfordii
TWI59G0395 Tripterygium wilfordii
TWI73G1144 Tripterygium wilfordii
unitig_0.g1004 Utricularia gibba
unitig_61.g26147 Utricularia gibba
vmacro02387 Vaccinium macrocarpon
vmacro02513 Vaccinium macrocarpon
vmacro14955 Vaccinium macrocarpon
vmacro14956 Vaccinium macrocarpon
vmacro15174 Vaccinium macrocarpon
VMungo0720G1557 Vigna mungo
VMungo1215G2798 Vigna mungo
VMungo1383G1657 Vigna mungo
VMungo1383G3554 Vigna mungo
Zm00001eb095560 Zea mays
Zm00001eb285190 Zea mays
Zm00001eb346250 Zea mays
Zm00001eb363310 Zea mays

User provided reference genes

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