Gene: AT4G16280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G16280
  • Transcript Identifier AT4G16280.4
  • Gene Type Coding gene
  • Location Chr4 : 9207164-9214187 : negative

Gene Family Information

  • ID HOM05D001495
  • #Genes/#Species 424/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G16280.4
  • symbol FCA
  • uniprot O04425

Descriptions

  • Description flowering time control protein FCA
  • Computational description FCA; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description RNA binding;abscisic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), WW/Rsp5/WWP (InterPro:IPR001202), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080113
ISO
PLAZA Integrative Orthologyregulation of seed growth Os09g0123200
GO:0008361
ISO
PLAZA Integrative Orthologyregulation of cell size Os09g0123200
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase Os09g0123200
GO:0030154
IEA
GOA Databasecell differentiation
GO:0009908
IEA
GOA Databaseflower development
GO:0031048
IMP
Gene Ontologyheterochromatin assembly by small RNA1
GO:0009793
IGI
Gene Ontologyembryo development ending in seed dormancy1
GO:0009553
IGI
Gene Ontologyembryo sac development1
GO:0009909
IMP
Gene Ontologyregulation of flower development2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
IBA
Gene OntologyRNA binding4 5
GO:0003729
IBA
Gene OntologymRNA binding5
GO:0010427
IDA
Gene Ontologyabscisic acid binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus5
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex5
GO:0016604
IDA
Gene Ontologynuclear body7
GO:0000785
TAS
Gene Ontologychromatin1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR034645 FCA, RNA recognition motif 2
IPR036020 WW domain superfamily
IPR000504 RNA recognition motif domain
IPR001202 WW domain
Mapman id Description
35.1 not assigned.annotated