Gene: AT4G03110

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G03110
  • Transcript Identifier AT4G03110.2
  • Gene Type Coding gene
  • Location Chr4 : 1376710-1379275 : negative

Gene Family Information

  • ID HOM05D001495
  • #Genes/#Species 424/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G03110.2
  • symbol RBP-DR1
  • Alias AtBRN1,AtRBP-DR1,RNA-binding protein-defense related 1,BRN1,Bruno-like 1
  • uniprot Q8LFS6

Descriptions

  • Description RNA-binding protein-defense related 1
  • Computational description RNA-binding protein-defense related 1 (RBP-DR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: plant-type hypersensitive response, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G03457.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description RNA-binding protein-defense related 1 (RBP-DR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: plant-type hypersensitive response, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G03457.1); Has 16162 Blast hits to 12321 proteins in 473 species: Archae - 8; Bacteria - 251; Metazoa - 10325; Fungi - 1647; Plants - 2258; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009908
IEA
GOA Databaseflower development
GO:0006952
IEA
GOA Databasedefense response
GO:2000028
IMP
Gene Ontologyregulation of photoperiodism, flowering1
GO:0006402
IDA
Gene OntologymRNA catabolic process1
GO:0080151
IMP
Gene Ontologypositive regulation of salicylic acid mediated signaling pathway2
GO:0009626
IMP
Gene Ontologyplant-type hypersensitive response2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 3 4
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding3
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990904
IEA
GOA Databaseribonucleoprotein complex
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex3
GO:1990904
IEA
InterProribonucleoprotein complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
IBA
Gene Ontologycytoplasm2 3
GO:0005634
IBA
Gene Ontologynucleus3
GO:0005829
HDA
Gene Ontologycytosol5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002343 Paraneoplastic encephalomyelitis antigen
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated