Gene: ATR0800G063
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0800G063
- Transcript Identifier ATR0800G063.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00046 : 2686070-2719031 : negative
Gene Family Information
- ID HOM05D001495
- #Genes/#Species 424/97
- Phylogenetic origin
- ID ORTHO05D001391
- #Genes/#Species 416/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00046.92.v1.0
- pacid 31553437
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT4G16280 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT4G16280 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | Os09g0123200 |
| GO:0008361 | ISO | PLAZA Integrative Orthology | regulation of cell size | Os09g0123200 |
| GO:0080113 | ISO | PLAZA Integrative Orthology | regulation of seed growth | Os09g0123200 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | AT4G16280 |
| GO:0031048 | ISO | PLAZA Integrative Orthology | heterochromatin assembly by small RNA | AT4G16280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT2G47310 |
| GO:0010427 | ISO | PLAZA Integrative Orthology | abscisic acid binding | AT4G16280 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990904 | IEA | InterPro | ribonucleoprotein complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | Os09g0123200 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT4G16280 |
| GO:0000785 | ISO | PLAZA Integrative Orthology | chromatin | AT4G16280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000504 | RNA recognition motif domain |
| IPR001202 | WW domain |
| IPR034645 | FCA, RNA recognition motif 2 |
| IPR002343 | Paraneoplastic encephalomyelitis antigen |
| IPR036020 | WW domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |