Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p37240 Brassica napus
A03p38240 Brassica napus
A05p36040 Brassica napus
A10p29970 Brassica napus
Aa31LG8G690 Aethionema arabicum
Aa31sc52G240 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4006 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1321 Anthoceros agrestis
Actinidia00904 Actinidia chinensis
Actinidia16242 Actinidia chinensis
Actinidia21024 Actinidia chinensis
Actinidia25822 Actinidia chinensis
Actinidia28154 Actinidia chinensis
Ah.07g202240 Amaranthus hybridus
Ah.07g202250 Amaranthus hybridus
Ah.07g202260 Amaranthus hybridus
Ah.13g072790 Amaranthus hybridus
AL2G12080 Arabidopsis lyrata
AL2G12100 Arabidopsis lyrata
AL3G23270 Arabidopsis lyrata
AL3G25400 Arabidopsis lyrata
AL3G25920 Arabidopsis lyrata
AL5G43040 Arabidopsis lyrata
Aqoxy5G00018 Aquilegia oxysepala
Aqoxy6G00349 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.23M4YM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J8SPSJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NSES8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WM6SSU Arachis hypogaea
AT3G11710 Arabidopsis thaliana
AT3G13490 Arabidopsis thaliana
AT3G30805 Arabidopsis thaliana
ATR0564G251 Amborella trichopoda
ATR0564G400 Amborella trichopoda
ATR0564G416 Amborella trichopoda
ATR1136G155 Amborella trichopoda
ATR1145G100 Amborella trichopoda
Atru.chr3.2103 Acer truncatum
Atru.chr3.2118 Acer truncatum
Atru.chr7.849 Acer truncatum
Atru.chr8.2261 Acer truncatum
Atru.chr8.2262 Acer truncatum
AUR62002331 Chenopodium quinoa
AUR62010759 Chenopodium quinoa
AUR62019760 Chenopodium quinoa
AUR62019974 Chenopodium quinoa
AUR62019975 Chenopodium quinoa
AUR62023857 Chenopodium quinoa
AUR62029567 Chenopodium quinoa
AUR62038835 Chenopodium quinoa
AUR62038836 Chenopodium quinoa
AUR62040899 Chenopodium quinoa
AUR62041375 Chenopodium quinoa
AUR62042626 Chenopodium quinoa
BcaB02g09944 Brassica carinata
BcaB04g18656 Brassica carinata
BcaB04g18767 Brassica carinata
BcaB04g21121 Brassica carinata
BcaB06g25588 Brassica carinata
BcaC01g04090 Brassica carinata
BcaC01g04097 Brassica carinata
BcaC02g12032 Brassica carinata
BcaC05g29175 Brassica carinata
BcaC05g29336 Brassica carinata
BcaC06g32376 Brassica carinata
BcaC09g48202 Brassica carinata
BolC1t05296H Brassica oleracea
BolC3t16772H Brassica oleracea
BolC5t34105H Brassica oleracea
BolC5t34284H Brassica oleracea
BolC6t36672H Brassica oleracea
BolC9t59783H Brassica oleracea
BraA01t04165Z Brassica rapa
BraA03t12884Z Brassica rapa
BraA05t22411Z Brassica rapa
BraA05t22559Z Brassica rapa
BraA10t45036Z Brassica rapa
C03p45100 Brassica napus
C05p54390 Brassica napus
C05p56200 Brassica napus
C06p14950 Brassica napus
C09p70380 Brassica napus
CAN.G125.22 Capsicum annuum
CAN.G1307.1 Capsicum annuum
CAN.G134.207 Capsicum annuum
CAN.G1834.11 Capsicum annuum
CAN.G2017.1 Capsicum annuum
CAN.G2017.2 Capsicum annuum
CAN.G65.176 Capsicum annuum
CANSAT11G0930 Cannabis sativa
CANSAT11G2257 Cannabis sativa
CANSAT35G0176 Cannabis sativa
CARHR086260 Cardamine hirsuta
CARHR088160 Cardamine hirsuta
Carub.0003s1105 Capsella rubella
Carub.0003s1296 Capsella rubella
Ca_07751_v3 Cicer arietinum L.
Ca_08011_v3 Cicer arietinum L.
Ca_08012_v3 Cicer arietinum L.
Ca_14801_v3 Cicer arietinum L.
Ca_29000_v3 Cicer arietinum L.
CBR_g37546 Chara braunii
CBR_g46728 Chara braunii
Cc00_g35510 Coffea canephora
Cc01_g00140 Coffea canephora
Cc04_g03350 Coffea canephora
Cc04_g03360 Coffea canephora
Cc06_g21230 Coffea canephora
Cc07_g21030 Coffea canephora
CDE10G0109 Ceratophyllum demersum
CDE10G1063 Ceratophyllum demersum
CDE10G1081 Ceratophyllum demersum
Cfa009558 Carpinus fangiana
Cfa025429 Carpinus fangiana
Cfa026384 Carpinus fangiana
Ciclev10007700m.g Citrus clementina
Ciclev10014735m.g Citrus clementina
CiPaw.07G194000 Carya illinoinensis
CiPaw.13G177500 Carya illinoinensis
ClCG02G024400 Citrullus lanatus
ClCG11G012010 Citrullus lanatus
COL.COLO4_07536 Corchorus olitorius
COL.COLO4_14515 Corchorus olitorius
COL.COLO4_14564 Corchorus olitorius
Cpa.g.sc119.38 Carica papaya
Cpa.g.sc95.40 Carica papaya
Cre03.g160500 Chlamydomonas reinhardtii
Cre06.g296250 Chlamydomonas reinhardtii
CsaV3_2G008510 Cucumis sativus L.
CsaV3_4G017540 Cucumis sativus L.
CSS0005079 Camellia sinensis var. sinensis
CSS0006691 Camellia sinensis var. sinensis
CSS0013295 Camellia sinensis var. sinensis
CSS0014405 Camellia sinensis var. sinensis
CSS0028494 Camellia sinensis var. sinensis
CSS0031496 Camellia sinensis var. sinensis
CSS0031763 Camellia sinensis var. sinensis
CSS0036832 Camellia sinensis var. sinensis
CSS0036924 Camellia sinensis var. sinensis
CSS0039869 Camellia sinensis var. sinensis
CSS0043872 Camellia sinensis var. sinensis
CSS0046527 Camellia sinensis var. sinensis
DCAR_001314 Daucus carota
DCAR_001315 Daucus carota
DCAR_006306 Daucus carota
DCAR_006307 Daucus carota
DCAR_006308 Daucus carota
DCAR_013137 Daucus carota
DCAR_017981 Daucus carota
DCAR_017982 Daucus carota
DCAR_017983 Daucus carota
DCAR_032192 Daucus carota
Dinv13475 Davidia involucrata
Dinv19557 Davidia involucrata
Dinv19558 Davidia involucrata
Duzib151G0853 Durio zibethinus
Duzib168G2316 Durio zibethinus
Duzib212G0443 Durio zibethinus
ECA232G0930 Erigeron canadensis
ECA232G0950 Erigeron canadensis
ECA232G1539 Erigeron canadensis
ECA232G1690 Erigeron canadensis
ECA232G2640 Erigeron canadensis
ECA232G2766 Erigeron canadensis
ECA232G2806 Erigeron canadensis
ECA232G3679 Erigeron canadensis
ECA232G4564 Erigeron canadensis
ECA232G4725 Erigeron canadensis
ECA233G2592 Erigeron canadensis
ECA240G4268 Erigeron canadensis
EL10Ac3g05985 Beta vulgaris
EL10Ac3g05987 Beta vulgaris
EL10Ac4g10388 Beta vulgaris
EL10Ac8g18419 Beta vulgaris
Eucgr.C00141 Eucalyptus grandis
Eucgr.J01764 Eucalyptus grandis
FAN07G2522 Fragaria x ananassa
FAN11G2371 Fragaria x ananassa
FAN11G2456 Fragaria x ananassa
FAN11G3607 Fragaria x ananassa
FAN12G1162 Fragaria x ananassa
FAN16G1301 Fragaria x ananassa
FAN16G2109 Fragaria x ananassa
FAN17G1624 Fragaria x ananassa
FAN21G1314 Fragaria x ananassa
FAN21G3965 Fragaria x ananassa
FAN22G1251 Fragaria x ananassa
FAN24G3074 Fragaria x ananassa
FAN25G0602 Fragaria x ananassa
FAN25G2788 Fragaria x ananassa
FvH4_2g08732 Fragaria vesca
FvH4_2g19022 Fragaria vesca
FvH4_3g07580 Fragaria vesca
FvH4_3g37790 Fragaria vesca
FvH4_3g45770 Fragaria vesca
FvH4_4g07860 Fragaria vesca
FvH4_6g23270 Fragaria vesca
Glyma.03G109000 Glycine max
Glyma.07G245700 Glycine max
Glyma.10G069800 Glycine max
Glyma.13G152678 Glycine max
Glyma.17G028300 Glycine max
Gohir.A02G091000 Gossypium hirsutum
Gohir.A02G091100 Gossypium hirsutum
Gohir.A08G014800 Gossypium hirsutum
Gohir.A09G165900 Gossypium hirsutum
Gohir.A10G142700 Gossypium hirsutum
Gohir.D02G109500 Gossypium hirsutum
Gohir.D08G025400 Gossypium hirsutum
Gohir.D09G161500 Gossypium hirsutum
Gohir.D10G124000 Gossypium hirsutum
Gorai.004G020700 Gossypium raimondii
Gorai.005G123900 Gossypium raimondii
Gorai.006G183200 Gossypium raimondii
Gorai.011G136900 Gossypium raimondii
GSVIVG01001584001 Vitis vinifera
GSVIVG01012484001 Vitis vinifera
GSVIVG01013971001 Vitis vinifera
GSVIVG01019319001 Vitis vinifera
GSVIVG01025473001 Vitis vinifera
GSVIVG01031124001 Vitis vinifera
HanXRQChr07g0202161 Helianthus annuus
HanXRQChr09g0244411 Helianthus annuus
HanXRQChr13g0405211 Helianthus annuus
Haze_21945 Corylus avellana
Haze_22937 Corylus avellana
Haze_26627 Corylus avellana
Hma1.2p1_0011F.1_g007250 Hydrangea macrophylla
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla
Hma1.2p1_1086F.1_g255440 Hydrangea macrophylla
HPP92_024267 Vanilla planifolia
Hund03172 Selenicereus undatus
Hund12017 Selenicereus undatus
Hund16176 Selenicereus undatus
Lalb_Chr13g0290681 Lupinus albus
Lalb_Chr15g0084021 Lupinus albus
Lalb_Chr18g0052401 Lupinus albus
Lj2C498G7 Lonicera japonica
Lj2g0001026 Lotus japonicus
Lj3C1024T5 Lonicera japonica
Lj3C269T1 Lonicera japonica
Lj3C272G7 Lonicera japonica
Lj4g0012621 Lotus japonicus
Lj6A106T27 Lonicera japonica
Lj6C105T18 Lonicera japonica
Lj6C105T5 Lonicera japonica
Lj6g0025404 Lotus japonicus
Lsat_1_v5_gn_6_52060 Lactuca sativa
Lsat_1_v5_gn_6_9881 Lactuca sativa
Lsat_1_v5_gn_7_53840 Lactuca sativa
Manes.03G087300 Manihot esculenta
Manes.07G091500 Manihot esculenta
Manes.10G055800 Manihot esculenta
Mapoly0003s0001 Marchantia polymorpha
Mapoly0090s0010 Marchantia polymorpha
MBI06_g35964_MAGBIO Magnolia biondii
MBI06_g41415_MAGBIO Magnolia biondii
MBI07_g05483_MAGBIO Magnolia biondii
MCO02G308 Micromonas commoda
MCO12G184 Micromonas commoda
MD03G1003300 Malus domestica
MD03G1170800 Malus domestica
MD11G1003100 Malus domestica
MD13G1247500 Malus domestica
MD13G1247600 Malus domestica
MD13G1248200 Malus domestica
MD16G1255000 Malus domestica
Medtr2g021780 Medicago truncatula
Medtr2g036600 Medicago truncatula
Medtr2g061670 Medicago truncatula
Medtr4g127770 Medicago truncatula
Medtr4g127790 Medicago truncatula
Medtr8g007295 Medicago truncatula
MELO3C004005.2 Cucumis melo
MELO3C014727.2 Cucumis melo
Migut.E00363 Erythranthe guttata
Migut.L01040 Erythranthe guttata
Migut.N00550 Erythranthe guttata
MSTRG.12798 Avicennia marina
MSTRG.13548 Avicennia marina
MSTRG.3730 Avicennia marina
Nitab4.5_0000119g0080 Nicotiana tabacum
Nitab4.5_0000158g0150 Nicotiana tabacum
Nitab4.5_0000551g0090 Nicotiana tabacum
Nitab4.5_0001111g0020 Nicotiana tabacum
Nitab4.5_0001416g0090 Nicotiana tabacum
Nitab4.5_0003132g0020 Nicotiana tabacum
Nitab4.5_0004453g0020 Nicotiana tabacum
Nitab4.5_0004453g0030 Nicotiana tabacum
Nitab4.5_0006195g0050 Nicotiana tabacum
Nitab4.5_0007119g0010 Nicotiana tabacum
Nitab4.5_0026343g0010 Nicotiana tabacum
Nn2g15862 Nelumbo nucifera
Nn4g24615 Nelumbo nucifera
Oeu004752.1 Olea europaea
Oeu018748.1 Olea europaea
Oeu018749.1 Olea europaea
Oeu059655.1 Olea europaea
Os02g0623500 Oryza sativa ssp. japonica
Os03g0586800 Oryza sativa ssp. japonica
Peaxi162Scf00014g00219 Petunia axillaris
Peaxi162Scf00375g00035 Petunia axillaris
Peaxi162Scf00705g00617 Petunia axillaris
Peaxi162Scf00904g00214 Petunia axillaris
PGR044G0366 Punica granatum
PGR044G0930 Punica granatum
PGR119G2138 Punica granatum
PGSC0003DMG400026909 Solanum tuberosum
PGSC0003DMG400032166 Solanum tuberosum
PGSC0003DMG402019176 Solanum tuberosum
Phvul.003G107000 Phaseolus vulgaris
Phvul.009G239100 Phaseolus vulgaris
Phvul.010G046400 Phaseolus vulgaris
Phvul.011G015700 Phaseolus vulgaris
Potri.003G221600 Populus trichocarpa
Potri.006G166000 Populus trichocarpa
Potri.018G090400 Populus trichocarpa
Potri.018G090600 Populus trichocarpa
Pp3c12_20520 Physcomitrium patens
Pp3c19_5720 Physcomitrium patens
Pp3c4_13380 Physcomitrium patens
Pp3c4_7510 Physcomitrium patens
Pp3c5_2240 Physcomitrium patens
PRCOL_00000537 Prasinoderma coloniale
PRCOL_00005729 Prasinoderma coloniale
Prupe.1G082400 Prunus persica
Prupe.1G083700 Prunus persica
Prupe.6G002900 Prunus persica
Psat0s3030g0040 Pisum sativum
Psat1g146840 Pisum sativum
PSO210G2861 Papaver somniferum
PSO478G1175 Papaver somniferum
PSO541G1999 Papaver somniferum
PSO541G5145 Papaver somniferum
PSO675G4629 Papaver somniferum
PSO675G5228 Papaver somniferum
QL01p003604 Quercus lobata
QL06p041077 Quercus lobata
QL06p041099 Quercus lobata
QL06p041145 Quercus lobata
QL11p005215 Quercus lobata
QL11p005238 Quercus lobata
QL11p005259 Quercus lobata
RcHm_v2.0_Chr4g0401131 Rosa chinensis
RcHm_v2.0_Chr5g0011081 Rosa chinensis
RcHm_v2.0_Chr5g0083841 Rosa chinensis
Rhsim03G0132300 Rhododendron simsii
Rhsim03G0265300 Rhododendron simsii
Rhsim04G0222500 Rhododendron simsii
Rhsim05G0069400 Rhododendron simsii
Rhsim12G0084100 Rhododendron simsii
Rhsim13G0233000 Rhododendron simsii
Sabra03G0164900 Salix brachista
Sabra06G0127700 Salix brachista
Sabra18G0077800 Salix brachista
SalBow1G4451 Salvia bowleyana
SalBow3G3489 Salvia bowleyana
SalBow5G3728 Salvia bowleyana
SalBow7G0701 Salvia bowleyana
Sc07g0006980 Simmondsia chinensis
Sc07g0006990 Simmondsia chinensis
Sc07g0007000 Simmondsia chinensis
Sc09g0000050 Simmondsia chinensis
Sed0000139 Sechium edule
Sed0016659 Sechium edule
Sed0020866 Sechium edule
Sed0027407 Sechium edule
SEGI_08077 Sequoiadendron giganteum
SEGI_17006 Sequoiadendron giganteum
SEGI_22674 Sequoiadendron giganteum
SEGI_27947 Sequoiadendron giganteum
SEGI_30847 Sequoiadendron giganteum
SEGI_34066 Sequoiadendron giganteum
SEGI_35430 Sequoiadendron giganteum
SEGI_37908 Sequoiadendron giganteum
SGA_v2.0_scaffold36G14548 Striga asiatica
SGA_v2.0_scaffold36G14550 Striga asiatica
SGA_v2.0_scaffold38G14974 Striga asiatica
SGA_v2.0_scaffold6G03312 Striga asiatica
SHI02889 Sapria himalayana
SMO194G0018 Selaginella moellendorffii
SMO358G0031 Selaginella moellendorffii
SMO358G0196 Selaginella moellendorffii
SMO365G0017 Selaginella moellendorffii
SMO365G0058 Selaginella moellendorffii
Solyc01g005540.4 Solanum lycopersicum
Solyc06g050400.3 Solanum lycopersicum
Solyc06g073330.4 Solanum lycopersicum
Solyc07g019620.3 Solanum lycopersicum
Solyc10g076610.2 Solanum lycopersicum
Solyc11g020030.3 Solanum lycopersicum
Solyc12g044690.3 Solanum lycopersicum
Sopen01g001560 Solanum pennellii
Sopen06g029700 Solanum pennellii
Sopen06g029710 Solanum pennellii
Sopen07g014360 Solanum pennellii
Sopen10g028250 Solanum pennellii
Sp3g09940 Schrenkiella parvula
Sp3g11700 Schrenkiella parvula
TAR625G0316 Trochodendron aralioides
TAR626G0028 Trochodendron aralioides
TAR633G1259 Trochodendron aralioides
THA.LOC104803944 Tarenaya hassleriana
THA.LOC104810321 Tarenaya hassleriana
THA.LOC104819974 Tarenaya hassleriana
Thecc.04G056800 Theobroma cacao
Thecc.04G166900 Theobroma cacao
Thecc.05G014000 Theobroma cacao
Thhalv10015509m.g Eutrema salsugineum
Thhalv10020276m.g Eutrema salsugineum
Thhalv10020319m.g Eutrema salsugineum
TPR.G15191 Trifolium pratense
TPR.G32117 Trifolium pratense
TPR.G40158 Trifolium pratense
TPR.G527 Trifolium pratense
TPR.G9243 Trifolium pratense
TWI53G0276 Tripterygium wilfordii
TWI73G0132 Tripterygium wilfordii
unitig_27.g25182 Utricularia gibba
unitig_27.g25184 Utricularia gibba
unitig_699.g19485 Utricularia gibba
vmacro04243 Vaccinium macrocarpon
vmacro06005 Vaccinium macrocarpon
vmacro19871 Vaccinium macrocarpon
vmacro23198 Vaccinium macrocarpon
VMungo0331G0364 Vigna mungo
VMungo1215G3442 Vigna mungo
VMungo1309G2403 Vigna mungo
Zm00001eb049290 Zea mays
Zm00001eb063750 Zea mays
Zm00001eb219500 Zea mays

User provided reference genes

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