Gene: Solyc01g005540.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g005540.4
  • Transcript Identifier Solyc01g005540.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 373533-383834 : negative

Gene Family Information

  • ID HOM05D001472
  • #Genes/#Species 431/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g005540.4.1
  • uniprot A0A3Q7EQP9
  • gene_id Solyc01g005540

Descriptions

  • Description Lysine--tRNA ligase (AHRD V3.3 *** A0A1U8HGH5_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT3G13490
GO:0006430
IBA
IEA
GOA Databaselysyl-tRNA aminoacylation
GO:0006430
IEA
InterProlysyl-tRNA aminoacylation
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G13490
GO:0000049
IBA
GOA DatabasetRNA binding
GO:0004824
IBA
IEA
GOA Databaselysine-tRNA ligase activity
GO:0004824
IEA
InterProlysine-tRNA ligase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G13490
GO:0005739
IBA
GOA Databasemitochondrion
GO:0005829
IBA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044136 Lysine-tRNA ligase, class II, N-terminal
IPR012340 Nucleic acid-binding, OB-fold
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR018149 Lysyl-tRNA synthetase, class II, C-terminal
IPR002313 Lysine-tRNA ligase, class II
IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)
Mapman id Description
17.2.13 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase