Gene: Sopen06g029700

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g029700
  • Transcript Identifier Sopen06g029700.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 55926689-55930942 : negative

Gene Family Information

  • ID HOM05D001472
  • #Genes/#Species 431/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g029700.1

Descriptions

  • Description Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice), lysyl-tRNA synthetase 1 (ATKRS-1) | FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity | INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation | LOCATED IN: cytoplasm | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) , Nucleic acid-binding, OB-fold-like , Aminoacyl-tRNA synthetase, class II (D/K/N)-like , Nucleic acid binding, OB-fold, tRNA/helicase-type , Lysyl-tRNA synthetase, class II, C-terminal , Lysyl-tRNA synthetase, class II , Aminoacyl-tRNA synthetase, class II, conserved domain | BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006430
ISO
PLAZA Homology (enrichment)lysyl-tRNA aminoacylation HOM05D001472

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D001472
GO:0004824
ISO
PLAZA Integrative Orthologylysine-tRNA ligase activity AT3G11710

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G11710
GO:0005737
ISO
PLAZA Homology (enrichment)cytoplasm HOM05D001472
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G11710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)
Mapman id Description
17.2.13 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase