Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p09990 Brassica napus
A03p24910 Brassica napus
A07p00620 Brassica napus
A09p00640 Brassica napus
A09p41230 Brassica napus
Aa31LG3G10820 Aethionema arabicum
Aa31LG5G4460 Aethionema arabicum
Aa31LG7G7430 Aethionema arabicum
Aa31LG8G16960 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1043 Anthoceros agrestis
Actinidia04659 Actinidia chinensis
Actinidia05098 Actinidia chinensis
Actinidia05099 Actinidia chinensis
Actinidia06695 Actinidia chinensis
Actinidia08152 Actinidia chinensis
Actinidia09578 Actinidia chinensis
Actinidia12412 Actinidia chinensis
Actinidia20411 Actinidia chinensis
Actinidia31450 Actinidia chinensis
Actinidia36944 Actinidia chinensis
Actinidia40496 Actinidia chinensis
Ah.02g130070 Amaranthus hybridus
Ah.05g175820 Amaranthus hybridus
Ah.09g228900 Amaranthus hybridus
AL1G37190 Arabidopsis lyrata
AL3G48070 Arabidopsis lyrata
AL7G21050 Arabidopsis lyrata
AL8G30350 Arabidopsis lyrata
Aqoxy1G03257 Aquilegia oxysepala
Aqoxy3G01276 Aquilegia oxysepala
Aqoxy5G02781 Aquilegia oxysepala
Aqoxy6G00497 Aquilegia oxysepala
Aqoxy7G03909 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1EV8X8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1WFB04 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2WK8MP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.411P2H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60E57G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BES7CG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CYHU50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E4JC76 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EFZ9HZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GGT1GB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KIJ6SB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KPXK74 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T8DWUL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VK49LJ Arachis hypogaea
AT1G23400 Arabidopsis thaliana
AT2G20020 Arabidopsis thaliana
AT4G31010 Arabidopsis thaliana
AT5G54890 Arabidopsis thaliana
ATR0311G003 Amborella trichopoda
ATR0564G053 Amborella trichopoda
ATR0705G141 Amborella trichopoda
ATR0752G061 Amborella trichopoda
ATR0752G092 Amborella trichopoda
ATR0796G079 Amborella trichopoda
Atru.BG.149.p Acer truncatum
Atru.chr1.3797 Acer truncatum
Atru.chr11.2068 Acer truncatum
Atru.chr2.3372 Acer truncatum
Atru.chr5.374 Acer truncatum
Atru.chr7.1426 Acer truncatum
AUR62004276 Chenopodium quinoa
AUR62005411 Chenopodium quinoa
AUR62014072 Chenopodium quinoa
AUR62015747 Chenopodium quinoa
AUR62020465 Chenopodium quinoa
AUR62025336 Chenopodium quinoa
AUR62028324 Chenopodium quinoa
AUR62033381 Chenopodium quinoa
BcaB01g02229 Brassica carinata
BcaB03g16793 Brassica carinata
BcaB05g22168 Brassica carinata
BcaB05g24958 Brassica carinata
BcaB07g32335 Brassica carinata
BcaC01g03736 Brassica carinata
BcaC03g14276 Brassica carinata
BcaC04g24189 Brassica carinata
BcaC04g24191 Brassica carinata
BcaC05g26257 Brassica carinata
BcaC05g29406 Brassica carinata
BcaC06g36677 Brassica carinata
BolC2t07755H Brassica oleracea
BolC5t30968H Brassica oleracea
BolC5t34380H Brassica oleracea
BolC7t40559H Brassica oleracea
BolC9t52957H Brassica oleracea
BraA02t06063Z Brassica rapa
BraA04t15978Z Brassica rapa
BraA07t27858Z Brassica rapa
BraA09t35696Z Brassica rapa
BraA09t39618Z Brassica rapa
C02p16570 Brassica napus
C05p22700 Brassica napus
C05p57180 Brassica napus
C07p01140 Brassica napus
C09p00220 Brassica napus
CAN.G1111.1 Capsicum annuum
CAN.G170.66 Capsicum annuum
CAN.G1812.8 Capsicum annuum
CAN.G337.123 Capsicum annuum
CAN.G546.28 Capsicum annuum
CANSAT01G0845 Cannabis sativa
CANSAT56G1283 Cannabis sativa
CANSAT56G4419 Cannabis sativa
CANSAT78G0231 Cannabis sativa
CARHR023840 Cardamine hirsuta
CARHR110500 Cardamine hirsuta
CARHR171470 Cardamine hirsuta
CARHR268230 Cardamine hirsuta
Carub.0001s2298 Capsella rubella
Carub.0003s3429 Capsella rubella
Carub.0007s0950 Capsella rubella
Carub.0008s1519 Capsella rubella
Ca_07343_v3 Cicer arietinum L.
Ca_07845_v3 Cicer arietinum L.
Ca_17350_v3 Cicer arietinum L.
Ca_22507_v3 Cicer arietinum L.
CBR_g4016 Chara braunii
Cc02_g37020 Coffea canephora
Cc05_g13790 Coffea canephora
Cc06_g10200 Coffea canephora
Cc11_g15360 Coffea canephora
CDE02G0266 Ceratophyllum demersum
CDE02G1372 Ceratophyllum demersum
CDE05G1369 Ceratophyllum demersum
CDE05G1501 Ceratophyllum demersum
CDE05G2501 Ceratophyllum demersum
CDE05G2673 Ceratophyllum demersum
CDE09G0710 Ceratophyllum demersum
Cfa003211 Carpinus fangiana
Cfa005661 Carpinus fangiana
Cfa009177 Carpinus fangiana
Cfa018721 Carpinus fangiana
Ciclev10008747m.g Citrus clementina
Ciclev10010654m.g Citrus clementina
Ciclev10020296m.g Citrus clementina
Ciclev10031138m.g Citrus clementina
CiPaw.02G164500 Carya illinoinensis
CiPaw.03G227000 Carya illinoinensis
CiPaw.05G186400 Carya illinoinensis
CiPaw.11G188100 Carya illinoinensis
ClCG05G001970 Citrullus lanatus
ClCG05G014350 Citrullus lanatus
ClCG05G025480 Citrullus lanatus
ClCG11G002280 Citrullus lanatus
COL.COLO4_12651 Corchorus olitorius
COL.COLO4_24212 Corchorus olitorius
COL.COLO4_34785 Corchorus olitorius
Cpa.g.sc18.168 Carica papaya
Cpa.g.sc40.34 Carica papaya
Cpa.g.sc97.16 Carica papaya
CsaV3_2G002040 Cucumis sativus L.
CsaV3_3G009380 Cucumis sativus L.
CsaV3_3G023000 Cucumis sativus L.
CsaV3_5G031420 Cucumis sativus L.
CSS0002148 Camellia sinensis var. sinensis
CSS0003269 Camellia sinensis var. sinensis
CSS0011523 Camellia sinensis var. sinensis
CSS0020653 Camellia sinensis var. sinensis
CSS0021949 Camellia sinensis var. sinensis
CSS0022122 Camellia sinensis var. sinensis
CSS0023271 Camellia sinensis var. sinensis
CSS0026370 Camellia sinensis var. sinensis
CSS0028517 Camellia sinensis var. sinensis
CSS0031060 Camellia sinensis var. sinensis
CSS0037775 Camellia sinensis var. sinensis
CSS0049717 Camellia sinensis var. sinensis
DCAR_006892 Daucus carota
DCAR_009573 Daucus carota
DCAR_024456 Daucus carota
DCAR_024698 Daucus carota
Dinv24821 Davidia involucrata
Dinv32409 Davidia involucrata
Dinv36704 Davidia involucrata
Dinv41652 Davidia involucrata
Duzib138G0745 Durio zibethinus
Duzib168G1568 Durio zibethinus
Duzib213G0555 Durio zibethinus
Duzib251G0822 Durio zibethinus
ECA233G2880 Erigeron canadensis
ECA240G2164 Erigeron canadensis
ECA240G3615 Erigeron canadensis
ECA246G0197 Erigeron canadensis
ECA246G4814 Erigeron canadensis
EL10Ac1g00955 Beta vulgaris
EL10Ac4g07836 Beta vulgaris
EL10Ac6g13705 Beta vulgaris
EL10Ac8g18963 Beta vulgaris
Eucgr.E00602 Eucalyptus grandis
Eucgr.E01328 Eucalyptus grandis
Eucgr.F00668 Eucalyptus grandis
Eucgr.F01559 Eucalyptus grandis
Eucgr.H01420 Eucalyptus grandis
Eucgr.H01431 Eucalyptus grandis
Eucgr.H01436 Eucalyptus grandis
Eucgr.H01443 Eucalyptus grandis
Eucgr.H02551 Eucalyptus grandis
FAN03G1497 Fragaria x ananassa
FAN06G0278 Fragaria x ananassa
FAN06G4514 Fragaria x ananassa
FAN07G0004 Fragaria x ananassa
FAN10G1191 Fragaria x ananassa
FAN10G1831 Fragaria x ananassa
FAN10G3927 Fragaria x ananassa
FAN11G1952 Fragaria x ananassa
FAN11G2124 Fragaria x ananassa
FAN12G3814 Fragaria x ananassa
FAN16G0118 Fragaria x ananassa
FAN16G2845 Fragaria x ananassa
FAN19G2994 Fragaria x ananassa
FAN21G2406 Fragaria x ananassa
FAN22G0134 Fragaria x ananassa
FAN23G2253 Fragaria x ananassa
FAN25G3173 Fragaria x ananassa
FAN26G0151 Fragaria x ananassa
FAN26G1517 Fragaria x ananassa
FAN28G1921 Fragaria x ananassa
FvH4_1g05780 Fragaria vesca
FvH4_3g22480 Fragaria vesca
FvH4_3g22500 Fragaria vesca
FvH4_4g32880 Fragaria vesca
FvH4_7g12730 Fragaria vesca
Glyma.01G093000 Glycine max
Glyma.01G147400 Glycine max
Glyma.05G228300 Glycine max
Glyma.08G035200 Glycine max
Glyma.08G285000 Glycine max
Glyma.09G075100 Glycine max
Glyma.16G024800 Glycine max
Glyma.18G140700 Glycine max
Gohir.A03G137900 Gossypium hirsutum
Gohir.A04G018300 Gossypium hirsutum
Gohir.A06G065800 Gossypium hirsutum
Gohir.A07G144501 Gossypium hirsutum
Gohir.D02G160900 Gossypium hirsutum
Gohir.D05G367700 Gossypium hirsutum
Gohir.D05G368068 Gossypium hirsutum
Gohir.D05G368110 Gossypium hirsutum
Gohir.D06G064400 Gossypium hirsutum
Gohir.D07G150400 Gossypium hirsutum
Gorai.001G172400 Gossypium raimondii
Gorai.005G181000 Gossypium raimondii
Gorai.009G435300 Gossypium raimondii
Gorai.009G436100 Gossypium raimondii
Gorai.010G075200 Gossypium raimondii
GSVIVG01013770001 Vitis vinifera
GSVIVG01013781001 Vitis vinifera
GSVIVG01015331001 Vitis vinifera
GSVIVG01027582001 Vitis vinifera
GSVIVG01037628001 Vitis vinifera
HanXRQChr03g0093631 Helianthus annuus
HanXRQChr08g0233851 Helianthus annuus
HanXRQChr09g0238911 Helianthus annuus
HanXRQChr17g0539501 Helianthus annuus
Haze_09662 Corylus avellana
Haze_09952 Corylus avellana
Haze_09953 Corylus avellana
Haze_12211 Corylus avellana
Haze_16710 Corylus avellana
Haze_25797 Corylus avellana
Hma1.2p1_0160F.1_g071080 Hydrangea macrophylla
Hma1.2p1_0945F.1_g240220 Hydrangea macrophylla
HPP92_006015 Vanilla planifolia
HPP92_010592 Vanilla planifolia
HPP92_024166 Vanilla planifolia
Hund02065 Selenicereus undatus
Hund09234 Selenicereus undatus
Hund16972 Selenicereus undatus
Hund25368 Selenicereus undatus
Lalb_Chr03g0039081 Lupinus albus
Lalb_Chr09g0331391 Lupinus albus
Lalb_Chr14g0371751 Lupinus albus
Lalb_Chr16g0392291 Lupinus albus
Lalb_Chr17g0341781 Lupinus albus
Lj1A871T88 Lonicera japonica
Lj1g0026215 Lotus japonicus
Lj2g0012244 Lotus japonicus
Lj2g0022649 Lotus japonicus
Lj4A407G8 Lonicera japonica
Lj4A409G43 Lonicera japonica
Lj4A409T44 Lonicera japonica
Lj4g0007510 Lotus japonicus
Lj4g0020570 Lotus japonicus
Lj6A808T42 Lonicera japonica
Lj6A808T43 Lonicera japonica
Lj9A575T47 Lonicera japonica
Lsat_1_v5_gn_3_135080 Lactuca sativa
Lsat_1_v5_gn_3_28500 Lactuca sativa
Lsat_1_v5_gn_5_6021 Lactuca sativa
Lsat_1_v5_gn_5_6041 Lactuca sativa
Lsat_1_v5_gn_7_41120 Lactuca sativa
Lsat_1_v5_gn_7_7020 Lactuca sativa
Lsat_1_v5_gn_8_86560 Lactuca sativa
Manes.03G124300 Manihot esculenta
Manes.05G041700 Manihot esculenta
Manes.12G026300 Manihot esculenta
Manes.13G028000 Manihot esculenta
Manes.16G111400 Manihot esculenta
Mapoly0064s0016 Marchantia polymorpha
Mapoly0141s0032 Marchantia polymorpha
MBI02_g13017_MAGBIO Magnolia biondii
MBI04_g27066_MAGBIO Magnolia biondii
MBI19_g32719_MAGBIO Magnolia biondii
MD02G1059500 Malus domestica
MD02G1197200 Malus domestica
MD03G1204000 Malus domestica
MD07G1124100 Malus domestica
MD11G1220900 Malus domestica
MD13G1094700 Malus domestica
MD15G1193500 Malus domestica
Medtr0194s0020 Medicago truncatula
Medtr7g039560 Medicago truncatula
Medtr7g075885 Medicago truncatula
Medtr8g069825 Medicago truncatula
Medtr8g102850 Medicago truncatula
MELO3C004577.2 Cucumis melo
MELO3C006157.2 Cucumis melo
MELO3C011982.2 Cucumis melo
MELO3C018119.2 Cucumis melo
Migut.B01670 Erythranthe guttata
Migut.E00179 Erythranthe guttata
Migut.K00519 Erythranthe guttata
Migut.M01774 Erythranthe guttata
MSTRG.13361 Avicennia marina
MSTRG.20782 Avicennia marina
Nitab4.5_0000012g0190 Nicotiana tabacum
Nitab4.5_0000066g0210 Nicotiana tabacum
Nitab4.5_0000329g0160 Nicotiana tabacum
Nitab4.5_0001127g0030 Nicotiana tabacum
Nitab4.5_0001819g0050 Nicotiana tabacum
Nitab4.5_0001913g0020 Nicotiana tabacum
Nitab4.5_0003182g0040 Nicotiana tabacum
Nitab4.5_0003812g0070 Nicotiana tabacum
Nn2g14015 Nelumbo nucifera
Nn3g21887 Nelumbo nucifera
Nn6g31968 Nelumbo nucifera
Nn8g40932 Nelumbo nucifera
Oeu005535.1 Olea europaea
Oeu018443.1 Olea europaea
Oeu036064.1 Olea europaea
Oeu036066.1 Olea europaea
Oeu043133.1 Olea europaea
Oeu053754.1 Olea europaea
Os01g0323300 Oryza sativa ssp. japonica
Os01g0495900 Oryza sativa ssp. japonica
Os05g0194000 Oryza sativa ssp. japonica
Os08g0174900 Oryza sativa ssp. japonica
Os08g0188000 Oryza sativa ssp. japonica
Peaxi162Scf00021g00238 Petunia axillaris
Peaxi162Scf00086g01321 Petunia axillaris
Peaxi162Scf00539g00006 Petunia axillaris
Peaxi162Scf00964g00149 Petunia axillaris
PGR042G1866 Punica granatum
PGR119G1021 Punica granatum
PGR142G4117 Punica granatum
PGSC0003DMG400022323 Solanum tuberosum
PGSC0003DMG400027434 Solanum tuberosum
PGSC0003DMG401000006 Solanum tuberosum
PGSC0003DMG401000410 Solanum tuberosum
Phvul.002G251600 Phaseolus vulgaris
Phvul.002G310400 Phaseolus vulgaris
Phvul.003G024100 Phaseolus vulgaris
Phvul.003G026601 Phaseolus vulgaris
Phvul.003G062100 Phaseolus vulgaris
Phvul.010G114000 Phaseolus vulgaris
Potri.001G423800 Populus trichocarpa
Potri.006G163100 Populus trichocarpa
Potri.010G042500 Populus trichocarpa
Potri.014G074400 Populus trichocarpa
Pp3c23_16010 Physcomitrium patens
Pp3c8_14060 Physcomitrium patens
Prupe.1G250700 Prunus persica
Prupe.2G151400 Prunus persica
Prupe.4G211400 Prunus persica
Prupe.7G223600 Prunus persica
Psat2g095640 Pisum sativum
Psat3g114040 Pisum sativum
Psat4g113640 Pisum sativum
Psat7g015680 Pisum sativum
PSO017G1435 Papaver somniferum
PSO081G0038 Papaver somniferum
PSO170G5607 Papaver somniferum
PSO210G5770 Papaver somniferum
PSO210G6932 Papaver somniferum
PSO357G0493 Papaver somniferum
QL02p042453 Quercus lobata
QL03p009923 Quercus lobata
QL03p059273 Quercus lobata
QL07p018724 Quercus lobata
QL08p011142 Quercus lobata
QL08p051019 Quercus lobata
QL08p051039 Quercus lobata
QL11p047070 Quercus lobata
RcHm_v2.0_Chr1g0351741 Rosa chinensis
RcHm_v2.0_Chr2g0091431 Rosa chinensis
RcHm_v2.0_Chr4g0441911 Rosa chinensis
RcHm_v2.0_Chr5g0039151 Rosa chinensis
Rhsim04G0057600 Rhododendron simsii
Rhsim05G0042000 Rhododendron simsii
Rhsim07G0022900 Rhododendron simsii
Rhsim12G0043600 Rhododendron simsii
Sabra06G0125500 Salix brachista
Sabra10G0024900 Salix brachista
Sabra11G0123800 Salix brachista
Sabra14G0053100 Salix brachista
Sabra16G0289000 Salix brachista
SalBow7G0575 Salvia bowleyana
SalBow8G1015 Salvia bowleyana
SalBow8G1051 Salvia bowleyana
SalBow8G2593 Salvia bowleyana
Sc03g0008640 Simmondsia chinensis
Sc04g0009280 Simmondsia chinensis
Sc08g0007820 Simmondsia chinensis
Sc26g0001100 Simmondsia chinensis
Sed0004015 Sechium edule
Sed0010108 Sechium edule
Sed0022257 Sechium edule
Sed0022733 Sechium edule
SEGI_12084 Sequoiadendron giganteum
SEGI_12825 Sequoiadendron giganteum
SEGI_14423 Sequoiadendron giganteum
SEGI_17354 Sequoiadendron giganteum
SEGI_33533 Sequoiadendron giganteum
SEGI_40094 Sequoiadendron giganteum
SGA_v2.0_scaffold153G37053 Striga asiatica
SGA_v2.0_scaffold19G08759 Striga asiatica
SGA_v2.0_scaffold63G21705 Striga asiatica
SGA_v2.0_scaffold80G25947 Striga asiatica
SHI31851 Sapria himalayana
SMO353G0332 Selaginella moellendorffii
Solyc01g091940.3 Solanum lycopersicum
Solyc05g018240.4 Solanum lycopersicum
Solyc07g064490.4 Solanum lycopersicum
Solyc11g066300.3 Solanum lycopersicum
Sopen01g037720 Solanum pennellii
Sopen05g015000 Solanum pennellii
Sopen07g032690 Solanum pennellii
Sopen11g026040 Solanum pennellii
Sp1g20840 Schrenkiella parvula
Sp3g33340 Schrenkiella parvula
Sp6g00300 Schrenkiella parvula
Sp6g16860 Schrenkiella parvula
TAR365G0971 Trochodendron aralioides
TAR376G0687 Trochodendron aralioides
TAR624G0236 Trochodendron aralioides
TAR627G1024 Trochodendron aralioides
THA.LOC104801472 Tarenaya hassleriana
THA.LOC104804012 Tarenaya hassleriana
THA.LOC104822974 Tarenaya hassleriana
Thecc.01G371100 Theobroma cacao
Thecc.02G254400 Theobroma cacao
Thecc.07G042200 Theobroma cacao
Thecc.07G042300 Theobroma cacao
Thecc.09G103900 Theobroma cacao
Thhalv10001924m.g Eutrema salsugineum
Thhalv10002944m.g Eutrema salsugineum
Thhalv10007246m.g Eutrema salsugineum
Thhalv10013970m.g Eutrema salsugineum
Thhalv10028716m.g Eutrema salsugineum
TPR.G2070 Trifolium pratense
TPR.G23497 Trifolium pratense
TPR.G24819 Trifolium pratense
TPR.G32731 Trifolium pratense
TPR.G37717 Trifolium pratense
TWI14G1062 Tripterygium wilfordii
TWI18G0845 Tripterygium wilfordii
TWI39G0354 Tripterygium wilfordii
TWI63G0391 Tripterygium wilfordii
unitig_0.g2550 Utricularia gibba
unitig_0.g2551 Utricularia gibba
unitig_0.g2552 Utricularia gibba
unitig_62.g23667 Utricularia gibba
unitig_8.g3342 Utricularia gibba
vmacro01154 Vaccinium macrocarpon
vmacro10866 Vaccinium macrocarpon
vmacro11730 Vaccinium macrocarpon
vmacro13352 Vaccinium macrocarpon
VMungo0251G0513 Vigna mungo
VMungo0251G1268 Vigna mungo
VMungo0251G3774 Vigna mungo
VMungo0331G0122 Vigna mungo
VMungo0331G1153 Vigna mungo
VMungo0720G1940 Vigna mungo
VMungo1215G0532 Vigna mungo
VMungo1215G0577 Vigna mungo
VMungo1215G1312 Vigna mungo
Zm00001eb130860 Zea mays
Zm00001eb171690 Zea mays
Zm00001eb306430 Zea mays
Zm00001eb414780 Zea mays

User provided reference genes

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