Gene: AT5G54890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54890
  • Transcript Identifier AT5G54890.1
  • Gene Type Coding gene
  • Location Chr5 : 22293346-22294909 : positive

Gene Family Information

  • ID HOM05D001273
  • #Genes/#Species 492/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54890.1
  • Alias mCSF2,mitochondrial CAF-like splicing factor 2
  • uniprot Q9FFU1

Descriptions

  • Description RNA-binding CRS1 / YhbY (CRM) domain-containing protein
  • Computational description RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT4G31010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000373
IEA
Gene OntologyGroup II intron splicing
GO:0000373
IEA
InterProGroup II intron splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
ISM
Gene Ontologymitochondrion1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035920 YhbY-like superfamily
IPR044599 CRS2-associated factor, plant
IPR001890 RNA-binding, CRM domain
Mapman id Description
16.11.4.2.1.8 RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.splicing factor (mCSF)