Gene: AT2G20020
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G20020
- Transcript Identifier AT2G20020.1
- Gene Type Coding gene
- Location Chr2 : 8644464-8647090 : positive
Gene Family Information
- ID HOM05D001273
- #Genes/#Species 492/97
- Phylogenetic origin
- ID ORTHO05D000023
- #Genes/#Species 3927/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G20020.1
- symbol CAF1
- uniprot Q9SL79
Descriptions
- Description RNA-binding CRS1 / YhbY (CRM) domain-containing protein
- Computational description CAF1; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT1G23400.1); Has 330 Blast hits to 282 proteins in 47 species: Archae - 0; Bacteria - 32; Metazoa - 20; Fungi - 4; Plants - 265; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000373 | IEA | GOA Database | Group II intron splicing | |
| GO:0000373 | IDA | Gene Ontology | Group II intron splicing | 1 |
| GO:0000373 | IEA | InterPro | Group II intron splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0008380 | IEA | GOA Database | RNA splicing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 2 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Zm00001eb306430 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IEA | GOA Database | chloroplast | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0009570 | IEA | GOA Database | chloroplast stroma | |
| GO:0009536 | IEA | GOA Database | plastid |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.9.2 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.component CAF |