Gene: Sopen05g015000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g015000
  • Transcript Identifier Sopen05g015000.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 26573082-26578395 : negative

Gene Family Information

  • ID HOM05D001273
  • #Genes/#Species 492/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g015000.1

Descriptions

  • Description Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns. | CAF1 | FUNCTIONS IN: RNA binding | INVOLVED IN: Group II intron splicing | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain | BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000373
IEA
InterProGroup II intron splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Zm00001eb306430
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G20020

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035920 YhbY-like superfamily
IPR044599 CRS2-associated factor, plant
IPR001890 RNA-binding, CRM domain
Mapman id Description
16.11.4.1.1.9.2 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.component CAF