Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16882 Vaccinium macrocarpon HOM05D001354 ORTHO05D014520 6.6e-45 183.7 97 100.0
vmacro16880 Vaccinium macrocarpon HOM05D001354 ORTHO05D002582 5.6e-20 100.9 68 82.4
Rhsim12G0190500 Rhododendron simsii HOM05D001354 ORTHO05D002582 7.4e-20 100.5 68 80.9
MD17G1213700 Malus domestica HOM05D001354 ORTHO05D002582 2.2e-16 89.0 68 75.0
MSTRG.11148 Avicennia marina HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
MSTRG.22753 Avicennia marina HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
Duzib160G0508 Durio zibethinus HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
Duzib192G0646 Durio zibethinus HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
ECA232G4844 Erigeron canadensis HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
Prupe.3G089600 Prunus persica HOM05D001354 ORTHO05D002582 2.9e-16 88.6 68 75.0
Solyc03g116810.4 Solanum lycopersicum HOM05D001354 ORTHO05D002582 2.9e-16 88.6 70 72.9
Cpa.g.sc167.7 Carica papaya HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
COL.COLO4_11914 Corchorus olitorius HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Nn2g12780 Nelumbo nucifera HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Nn3g20753 Nelumbo nucifera HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Potri.001G253500 Populus trichocarpa HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Potri.016G112800 Populus trichocarpa HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Rhsim08G0212200 Rhododendron simsii HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Sabra16G0154300 Salix brachista HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
TAR624G0075 Trochodendron aralioides HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
TAR636G3220 Trochodendron aralioides HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
vmacro19007 Vaccinium macrocarpon HOM05D001354 ORTHO05D002582 3.8e-16 88.2 68 75.0
Dinv38131 Davidia involucrata HOM05D001354 ORTHO05D002582 4.9e-16 87.8 68 75.0
Peaxi162Scf00332g00534 Petunia axillaris HOM05D001354 ORTHO05D002582 4.9e-16 87.8 68 73.5
QL04p090747 Quercus lobata HOM05D001354 ORTHO05D002582 4.9e-16 87.8 68 75.0
QL09p016638 Quercus lobata HOM05D001354 ORTHO05D002582 4.9e-16 87.8 68 75.0
CAN.G407.72 Capsicum annuum HOM05D001354 ORTHO05D002582 6.5e-16 87.4 66 75.8
CiPaw.01G249200 Carya illinoinensis HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
ClCG07G012210 Citrullus lanatus HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
Haze_16573 Corylus avellana HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
MELO3C017841.2 Cucumis melo HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
CsaV3_4G001950 Cucumis sativus L. HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
Manes.04G111700 Manihot esculenta HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
Manes.11G058150 Manihot esculenta HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
QL05p030676 Quercus lobata HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
Sed0019227 Sechium edule HOM05D001354 ORTHO05D002582 6.5e-16 87.4 68 75.0
Sopen03g035740 Solanum pennellii HOM05D001354 ORTHO05D002582 6.5e-16 87.4 66 75.8
PGSC0003DMG400000625 Solanum tuberosum HOM05D001354 ORTHO05D002582 6.5e-16 87.4 66 75.8
AL1G55710 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 8.4e-16 87.0 68 73.5
AL1G55720 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 8.4e-16 87.0 68 73.5
AT1G48900 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 8.4e-16 87.0 68 73.5
Carub.0001s3804 Capsella rubella HOM05D001354 ORTHO05D002582 8.4e-16 87.0 68 73.5
CARHR038890 Cardamine hirsuta HOM05D001354 ORTHO05D002582 8.4e-16 87.0 68 73.5
Thecc.06G030200 Theobroma cacao HOM05D001354 ORTHO05D002582 8.4e-16 87.0 66 75.8
HanXRQChr02g0033421 Helianthus annuus HOM05D001354 ORTHO05D002582 1.1e-15 86.7 68 73.5
Migut.I00754 Erythranthe guttata HOM05D001354 ORTHO05D002582 1.4e-15 86.3 68 73.5
Gohir.A10G073000 Gossypium hirsutum HOM05D001354 ORTHO05D002582 1.4e-15 86.3 66 75.8
Gohir.D10G078000 Gossypium hirsutum HOM05D001354 ORTHO05D002582 1.4e-15 86.3 66 75.8
Gorai.011G084700 Gossypium raimondii HOM05D001354 ORTHO05D002582 1.4e-15 86.3 66 75.8
HanXRQChr04g0097901 Helianthus annuus HOM05D001354 ORTHO05D002582 1.4e-15 86.3 68 73.5
Lsat_1_v5_gn_1_34301 Lactuca sativa HOM05D001354 ORTHO05D002582 1.4e-15 86.3 68 73.5
Phvul.010G156800 Phaseolus vulgaris HOM05D001354 ORTHO05D002582 1.4e-15 86.3 68 73.5
VMungo0331G0245 Vigna mungo HOM05D001354 ORTHO05D002582 1.4e-15 86.3 68 73.5
Actinidia15752 Actinidia chinensis HOM05D001354 ORTHO05D002582 1.9e-15 85.9 68 73.5
Ca_01051_v3 Cicer arietinum L. HOM05D001354 ORTHO05D002582 1.9e-15 85.9 66 74.2
THA.LOC104800439 Tarenaya hassleriana HOM05D001354 ORTHO05D002582 1.9e-15 85.9 68 73.5
Cfa001952 Carpinus fangiana HOM05D001354 ORTHO05D002582 2.5e-15 85.5 68 73.5
Glyma.07G029200 Glycine max HOM05D001354 ORTHO05D002582 3.2e-15 85.1 66 74.2
Glyma.08G213600 Glycine max HOM05D001354 ORTHO05D002582 3.2e-15 85.1 66 74.2
Lj5C74G15 Lonicera japonica HOM05D001354 ORTHO05D002582 3.2e-15 85.1 68 73.5
Nitab4.5_0003463g0040 Nicotiana tabacum HOM05D001354 ORTHO05D002582 3.2e-15 85.1 66 74.2
Nitab4.5_0008560g0030 Nicotiana tabacum HOM05D001354 ORTHO05D002582 3.2e-15 85.1 66 74.2
Peaxi162Scf01093g00218 Petunia axillaris HOM05D001354 ORTHO05D002582 3.2e-15 85.1 68 73.5
Oeu018807.1 Olea europaea HOM05D001354 ORTHO05D002582 4.2e-15 84.7 66 74.2
BcaB04g17379 Brassica carinata HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
BcaC07g37095 Brassica carinata HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
A08p04340 Brassica napus HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
C08p04610 Brassica napus HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
BolC8t47265H Brassica oleracea HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
BraA08t32460Z Brassica rapa HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 72.7
Ca_12524_v3 Cicer arietinum L. HOM05D001354 ORTHO05D002582 5.5e-15 84.3 66 74.2
SalBow2G1608 Salvia bowleyana HOM05D001354 ORTHO05D014520 5.5e-15 84.3 68 72.1
arahy.Tifrunner.gnm1.ann1.5IPV2R Arachis hypogaea HOM05D001354 ORTHO05D002582 7.1e-15 84.0 66 72.7
arahy.Tifrunner.gnm1.ann1.UV9SWK Arachis hypogaea HOM05D001354 ORTHO05D002582 7.1e-15 84.0 66 72.7
BcaC08g43088 Brassica carinata HOM05D001354 ORTHO05D002582 7.1e-15 84.0 65 73.8
C06p03470 Brassica napus HOM05D001354 ORTHO05D002582 7.1e-15 84.0 65 73.8
BolC6t35487H Brassica oleracea HOM05D001354 ORTHO05D002582 7.1e-15 84.0 65 73.8
BraA06t23619Z Brassica rapa HOM05D001354 ORTHO05D002582 7.1e-15 84.0 65 73.8
Psat7g257320 Pisum sativum HOM05D001354 ORTHO05D002582 7.1e-15 84.0 68 72.1
Sp1g35810 Schrenkiella parvula HOM05D001354 ORTHO05D002582 7.1e-15 84.0 65 73.8
Aqoxy7G00828 Aquilegia oxysepala HOM05D001354 ORTHO05D002582 9.3e-15 83.6 65 73.8
CANSAT56G2642 Cannabis sativa HOM05D001354 ORTHO05D002582 9.3e-15 83.6 66 72.7
CiPaw.02G157800 Carya illinoinensis HOM05D001354 ORTHO05D002582 9.3e-15 83.6 66 72.7
Lalb_Chr04g0262351 Lupinus albus HOM05D001354 ORTHO05D002582 9.3e-15 83.6 68 72.1
Lalb_Chr25g0279251 Lupinus albus HOM05D001354 ORTHO05D002582 9.3e-15 83.6 68 72.1
Aa31LG7G80 Aethionema arabicum HOM05D001354 ORTHO05D002582 1.2e-14 83.2 68 69.1
Migut.H01871 Erythranthe guttata HOM05D001354 ORTHO05D002582 1.2e-14 83.2 66 71.2
Sed0001805 Sechium edule HOM05D001354 ORTHO05D002582 1.2e-14 83.2 65 73.8
Sed0014737 Sechium edule HOM05D001354 ORTHO05D002582 1.2e-14 83.2 65 73.8
Sed0027732 Sechium edule HOM05D001354 ORTHO05D002582 1.2e-14 83.2 65 73.8
Lj9C498T12 Lonicera japonica HOM05D001354 ORTHO05D002582 1.6e-14 82.8 68 69.1
TPR.G38698 Trifolium pratense HOM05D001354 ORTHO05D002582 1.6e-14 82.8 66 72.7
Solyc12g042740.2 Solanum lycopersicum HOM05D001354 ORTHO05D002582 2.1e-14 82.4 72 70.8
Sopen12g021920 Solanum pennellii HOM05D001354 ORTHO05D002582 2.1e-14 82.4 72 70.8
PGSC0003DMG400028629 Solanum tuberosum HOM05D001354 ORTHO05D002582 2.1e-14 82.4 72 70.8
Eucgr.F03884 Eucalyptus grandis HOM05D001354 ORTHO05D002582 2.7e-14 82.0 66 69.7
Glyma.15G006700 Glycine max HOM05D001354 ORTHO05D002582 2.7e-14 82.0 69 72.5
Lj3g0022067 Lotus japonicus HOM05D001354 ORTHO05D002582 2.7e-14 82.0 70 71.4
TPR.G37269 Trifolium pratense HOM05D001354 ORTHO05D002582 3.5e-14 81.6 66 71.2
TWI18G0080 Tripterygium wilfordii HOM05D001354 ORTHO05D002582 3.5e-14 81.6 70 68.6
VMungo1080G0941 Vigna mungo HOM05D001354 ORTHO05D002582 3.5e-14 81.6 69 72.5
PGR031G3144 Punica granatum HOM05D001354 ORTHO05D002582 6.0e-14 80.9 66 69.7
unitig_744.g24451 Utricularia gibba HOM05D001354 ORTHO05D014520 6.0e-14 80.9 68 67.6
Thhalv10011425m.g Eutrema salsugineum HOM05D001354 ORTHO05D002582 7.9e-14 80.5 65 70.8
Potri.009G047902 Populus trichocarpa HOM05D001354 ORTHO05D002582 7.9e-14 80.5 68 69.1
TWI12G1327 Tripterygium wilfordii HOM05D001354 ORTHO05D002582 7.9e-14 80.5 70 67.1
arahy.Tifrunner.gnm1.ann1.CWCJ30 Arachis hypogaea HOM05D001354 ORTHO05D002582 1.0e-13 80.1 66 71.2
Ciclev10025458m.g Citrus clementina HOM05D001354 ORTHO05D002582 1.0e-13 80.1 66 72.7
Glyma.13G366500 Glycine max HOM05D001354 ORTHO05D002582 1.0e-13 80.1 64 73.4
MBI04_g36309_MAGBIO Magnolia biondii HOM05D001354 ORTHO05D002582 1.0e-13 80.1 65 75.4
ATR0691G124 Amborella trichopoda HOM05D001354 ORTHO05D002582 1.3e-13 79.7 66 69.7
ATR0751G012 Amborella trichopoda HOM05D001354 ORTHO05D002582 1.3e-13 79.7 66 69.7
Carub.0008s0935 Capsella rubella HOM05D001354 ORTHO05D002582 1.3e-13 79.7 65 66.2
Eucgr.I00867 Eucalyptus grandis HOM05D001354 ORTHO05D002582 1.3e-13 79.7 66 68.2
Phvul.005G179000 Phaseolus vulgaris HOM05D001354 ORTHO05D002582 1.3e-13 79.7 68 72.1
SHI12844 Sapria himalayana HOM05D001354 ORTHO05D002582 1.8e-13 79.3 62 72.6
arahy.Tifrunner.gnm1.ann1.DTT4AE Arachis hypogaea HOM05D001354 ORTHO05D002582 2.3e-13 79.0 64 71.9
Lsat_1_v5_gn_4_87641 Lactuca sativa HOM05D001354 ORTHO05D002582 2.3e-13 79.0 62 74.2
Sed0015105 Sechium edule HOM05D001354 ORTHO05D002582 2.3e-13 79.0 57 75.4
Medtr4g010050 Medicago truncatula HOM05D001354 ORTHO05D002582 3.0e-13 78.6 66 68.2
Oeu004222.1 Olea europaea HOM05D001354 ORTHO05D002582 5.1e-13 77.8 64 71.9
CSS0046572 Camellia sinensis var. sinensis HOM05D001354 ORTHO05D002582 8.7e-13 77.0 66 68.2
Sabra16G0108500 Salix brachista HOM05D001354 ORTHO05D002582 1.5e-12 76.3 90 56.7
SGA_v2.0_scaffold5G02709 Striga asiatica HOM05D001354 ORTHO05D002582 3.3e-12 75.1 67 65.7
SEGI_21139 Sequoiadendron giganteum HOM05D001354 ORTHO05D014520 4.3e-12 74.7 65 70.8
CDE04G2225 Ceratophyllum demersum HOM05D001354 ORTHO05D002582 7.4e-12 73.9 65 69.2
PGR004G2643 Punica granatum HOM05D001354 ORTHO05D002582 9.7e-12 73.6 61 65.6
AT5G49500 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 1.3e-11 73.2 65 64.6
Hma1.2p1_0495F.1_g165670 Hydrangea macrophylla HOM05D001354 ORTHO05D002582 1.3e-11 73.2 68 64.7
SEGI_16228 Sequoiadendron giganteum HOM05D001354 ORTHO05D002582 1.3e-11 73.2 65 69.2
Os01g0772800 Oryza sativa ssp. japonica HOM05D001354 ORTHO05D002582 1.6e-11 72.8 65 69.2
HPP92_005474 Vanilla planifolia HOM05D001354 ORTHO05D002582 1.6e-11 72.8 66 71.2
CDE02G0107 Ceratophyllum demersum HOM05D001354 ORTHO05D002582 2.8e-11 72.0 65 67.7
Pp3c17_5890 Physcomitrium patens HOM05D001354 ORTHO05D002582 4.8e-11 71.2 66 65.2
Pp3s318_20 Physcomitrium patens HOM05D001354 ORTHO05D002582 4.8e-11 71.2 66 65.2
Pp3s318_30 Physcomitrium patens HOM05D001354 ORTHO05D002582 4.8e-11 71.2 66 65.2
Hund06551 Selenicereus undatus HOM05D001354 ORTHO05D002582 1.8e-10 69.3 67 65.7
AagrBONN_evm.TU.Sc2ySwM_368.576 Anthoceros agrestis HOM05D001354 ORTHO05D002582 4.1e-10 68.2 66 62.1
Mapoly0001s0238 Marchantia polymorpha HOM05D001354 ORTHO05D002582 5.3e-10 67.8 65 64.6
Atru.chr1.2894 Acer truncatum HOM05D001354 ORTHO05D002582 6.9e-10 67.4 72 62.5
CBR_g41454 Chara braunii HOM05D001354 ORTHO05D002582 6.9e-10 67.4 66 62.1
Oeu004221.1 Olea europaea HOM05D001354 ORTHO05D002582 6.9e-10 67.4 49 73.5
Cc04_g04500 Coffea canephora HOM05D001354 ORTHO05D002582 9.0e-10 67.0 71 62.0
SMO339G0068 Selaginella moellendorffii HOM05D001354 ORTHO05D002582 2.6e-09 65.5 61 65.6
AT1G15310 Arabidopsis thaliana HOM05D001354 ORTHO05D002582 4.5e-09 64.7 41 75.6
CARHR015840 Cardamine hirsuta HOM05D001354 ORTHO05D002582 4.5e-09 64.7 65 56.9
FAN18G2562 Fragaria x ananassa HOM05D001354 ORTHO05D002582 2.9e-08 62.0 69 62.3
AagrBONN_evm.TU.Sc2ySwM_368.3165 Anthoceros agrestis HOM05D001354 ORTHO05D002582 6.5e-08 60.8 62 54.8
FAN08G3422 Fragaria x ananassa HOM05D001354 ORTHO05D002582 6.5e-08 60.8 69 60.9
Atru.chr1.2899 Acer truncatum HOM05D001354 ORTHO05D002582 1.1e-07 60.1 55 67.3
FAN04G2160 Fragaria x ananassa HOM05D001354 ORTHO05D002582 1.9e-07 59.3 69 63.8
AL1G27400 Arabidopsis lyrata HOM05D001354 ORTHO05D002582 5.5e-07 57.8 68 51.5
Aqoxy7G01239 Aquilegia oxysepala HOM05D001354 ORTHO05D002582 9.3e-07 57.0 68 54.4
DCAR_025520 Daucus carota HOM05D001354 ORTHO05D002582 1.2e-06 56.6 49 69.4
Nitab4.5_0001271g0100 Nicotiana tabacum HOM05D001354 ORTHO05D002582 1.2e-06 56.6 49 69.4
Nitab4.5_0003157g0040 Nicotiana tabacum HOM05D001354 ORTHO05D002582 1.2e-06 56.6 49 69.4
Migut.H01982 Erythranthe guttata HOM05D001354 ORTHO05D002582 1.6e-06 56.2 65 56.9
AUR62016327 Chenopodium quinoa HOM05D001354 ORTHO05D002582 2.1e-06 55.8 50 68.0
DCAR_028114 Daucus carota HOM05D001354 ORTHO05D002582 2.7e-06 55.5 49 67.3
FvH4_5g33730 Fragaria vesca HOM05D001354 ORTHO05D002582 2.7e-06 55.5 69 58.0
FvH4_2g33430 Fragaria vesca HOM05D001354 ORTHO05D002582 3.6e-06 55.1 49 69.4
FAN20G1566 Fragaria x ananassa HOM05D001354 ORTHO05D002582 3.6e-06 55.1 49 69.4
FAN24G0262 Fragaria x ananassa HOM05D001354 ORTHO05D002582 3.6e-06 55.1 49 69.4
FAN27G1035 Fragaria x ananassa HOM05D001354 ORTHO05D002582 3.6e-06 55.1 49 69.4
Sp1g13630 Schrenkiella parvula HOM05D001354 ORTHO05D002582 6.1e-06 54.3 60 58.3


User provided reference genes

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