Gene: PGSC0003DMG400028629

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400028629
  • Transcript Identifier PGSC0003DMT400073698
  • Gene Type Coding gene
  • Location ST4.03ch12 : 49726620-49733562 : negative

Gene Family Information

  • ID HOM05D001354
  • #Genes/#Species 463/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37447539
  • id PGSC0003DMG400028629.v4.03
  • uniprot M1CSH6

Descriptions

  • Description Signal recognition particle 54 kDa protein 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006616
IBA
GOA DatabaseSRP-dependent cotranslational protein targeting to membrane, translocation
GO:0006614
IEA
GOA DatabaseSRP-dependent cotranslational protein targeting to membrane
GO:0006614
IEA
InterProSRP-dependent cotranslational protein targeting to membrane
GO:0045047
IEA
GOA Databaseprotein targeting to ER

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G49500
GO:0030942
IBA
GOA Databaseendoplasmic reticulum signal peptide binding
GO:0008312
IBA
IEA
GOA Database7S RNA binding
GO:0008312
IEA
InterPro7S RNA binding
GO:0003924
IBA
IEA
GOA DatabaseGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005829
IBA
GOA Databasecytosol
GO:0005786
IBA
IEA
GOA Databasesignal recognition particle, endoplasmic reticulum targeting
GO:0048500
IEA
GOA Databasesignal recognition particle
GO:0048500
IEA
InterProsignal recognition particle

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily
IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily
IPR036225 SRP/SRP receptor, N-terminal
IPR003593 AAA+ ATPase domain
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
IPR013822 Signal recognition particle SRP54, helical bundle
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR006325 Signal recognition particle, SRP54 subunit, eukaryotic
IPR022941 Signal recognition particle, SRP54 subunit
Mapman id Description
23.3.1.1.5 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP54