Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1951.0 975 100.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1741.5 966 90.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1657.9 959 86.4
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1639.4 964 85.6
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1639.4 964 85.6
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1609.3 964 83.5
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1558.9 963 79.9
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 965 80.8
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 967 80.5
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 965 80.4
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 964 80.4
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 966 81.1
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 965 80.1
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 952 81.1
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 965 80.7
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1539.2 964 79.9
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 965 79.6
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 950 80.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 944 80.9
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 954 80.4
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 958 80.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 965 80.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 964 80.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 950 80.3
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 950 80.2
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 950 80.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 952 79.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 964 80.0
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 965 79.9
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 964 78.8
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 950 79.5
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 967 78.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 950 79.5
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 956 79.2
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1511.5 964 77.8
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 964 78.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 964 77.6
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 967 78.2
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 964 77.8
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 966 78.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 964 77.1
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 964 77.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1500.0 956 78.3
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 965 77.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 953 79.1
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 944 80.1
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 969 77.4
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 964 77.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 976 77.2
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 970 77.8
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 951 78.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 974 77.1
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 974 77.1
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 964 77.1
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1488.0 978 78.8
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 965 77.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 965 76.7
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 944 79.6
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 965 77.1
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1482.2 977 76.6
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 973 76.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 972 77.1
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 965 78.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 975 76.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 1004 75.0
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 961 77.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 957 77.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 972 76.5
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 948 77.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 960 76.7
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 966 77.4
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1460.3 966 75.9
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1459.5 967 76.8
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 964 74.8
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1458.4 966 75.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 964 74.7
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 977 75.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 973 75.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1446.8 966 74.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1444.9 964 75.9
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1439.5 966 75.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1437.2 960 75.2
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1435.6 954 75.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1434.1 981 73.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1422.9 944 75.6
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1421.4 946 75.5
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1421.4 946 75.5
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1420.6 944 75.5
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1420.2 944 75.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1419.8 946 75.5
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1418.7 944 75.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1418.7 944 75.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1415.2 944 75.2
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1414.8 959 74.1
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1414.4 966 74.6
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1414.1 946 75.5
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1410.2 944 74.9
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1408.3 947 75.0
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1406.3 946 74.7
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1386.7 960 72.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1368.6 945 73.5
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1340.9 954 69.7
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1340.1 959 69.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1327.4 837 79.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1309.3 944 70.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1287.3 966 67.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1276.9 858 75.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1266.1 959 69.6
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1241.1 850 74.4
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1232.2 737 82.9
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1181.4 716 81.3
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1149.8 964 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1126.7 965 59.2
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1110.9 999 57.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 1.4e-304 1049.7 951 58.0
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 7.8e-303 1043.9 1023 53.8
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 3.3e-301 1038.5 672 78.1
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 9.2e-296 1020.4 656 78.7
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.6e-276 956.4 713 66.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.8e-228 796.2 982 44.6
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.2e-194 684.5 465 74.8
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.2e-187 658.3 451 71.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 9.4e-115 419.1 1071 28.2
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.0e-113 413.7 652 39.4
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.6e-106 391.7 304 65.1
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.1e-74 283.1 209 70.3
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.4e-63 246.9 184 69.6
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 6.0e-61 240.4 201 59.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.2e-50 203.8 125 80.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.8e-49 202.2 273 45.8
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 2.5e-43 181.8 134 68.7
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.2e-37 162.9 139 61.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.6e-37 161.0 174 51.1
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.0e-29 134.0 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 2.2e-15 89.0 80 60.0
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 2.4e-09 68.9 102 46.1
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 9.1e-09 67.0 130 36.9
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 2.2e-07 62.4 45 68.9


User provided reference genes

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