Gene: AL3G42770

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL3G42770
  • Transcript Identifier AL3G42770.t1
  • Gene Type Coding gene
  • Location scaffold_3 : 13802561-13805858 : positive

Gene Family Information

  • ID HOM05D005707
  • #Genes/#Species 136/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL3G42770.v2.1
  • synonym 480131
  • synonym fgenesh2_kg.3__2832__AT2G05170.1
  • pacid 35942811

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0007033
ISO
PLAZA Integrative Orthologyvacuole organization AT2G05170

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009705
ISO
PLAZA Integrative Orthologyplant-type vacuole membrane AT2G05170
GO:0033263
ISO
PLAZA Integrative OrthologyCORVET complex AT2G05170
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT2G05170
GO:0030897
ISO
PLAZA Integrative OrthologyHOPS complex AT2G05170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001841 Zinc finger, RING-type
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
IPR024763 Vacuolar protein sorting protein 11, C-terminal
IPR016528 Vacuolar protein sorting-associated protein 11
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
22.3.4.9.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS11