Gene: Nitab4.5_0000303g0290
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0000303g0290
- Transcript Identifier Nitab4.5_0000303g0290.1
- Gene Type Coding gene
- Location Nitab4.5_0000303 : 949119-955953 : negative
Gene Family Information
- ID HOM05D005707
- #Genes/#Species 136/97
- Phylogenetic origin
- ID ORTHO05D007276
- #Genes/#Species 132/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0000303g0290.1
- SR1-identifier Nta12g07850.1
Descriptions
- Description WD40-repeat-containing domain, WD40/YVTN repeat-like-containing domain, Zinc finger, RING/FYVE/PHD-type, Vacuolar protein sorting-associated protein 11, Zinc finger, RING-type, Clathrin, heavy chain/VPS, 7-fold repeat, Vacuolar protein sorting protein 11, C-terminal
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0007033 | ISO | PLAZA Integrative Orthology | vacuole organization | AT2G05170 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009705 | ISO | PLAZA Integrative Orthology | plant-type vacuole membrane | AT2G05170 |
| GO:0033263 | ISO | PLAZA Integrative Orthology | CORVET complex | AT2G05170 |
| GO:0032991 | ISO | PLAZA Integrative Orthology | protein-containing complex | AT2G05170 |
| GO:0030897 | ISO | PLAZA Integrative Orthology | HOPS complex | AT2G05170 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001841 | Zinc finger, RING-type |
| IPR016528 | Vacuolar protein sorting-associated protein 11 |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
| IPR024763 | Vacuolar protein sorting protein 11, C-terminal |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| Mapman id | Description |
|---|---|
| 22.3.4.9.1 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS11 |