Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 0.0e+00 1147.9 664 100.0
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.6e-243 845.1 662 78.9
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.1e-180 637.5 552 69.2
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.7e-158 562.4 591 64.3
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 6.1e-158 562.0 576 62.7
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.2e-156 557.8 539 66.6
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 7.5e-156 555.1 601 59.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.8e-154 550.4 650 55.8
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.4e-146 524.2 500 63.4
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.2e-145 521.2 588 57.0
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.6e-145 520.8 559 58.9
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 9.5e-143 511.5 557 56.6
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 3.6e-142 509.6 602 56.0
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 4.0e-141 506.1 560 57.7
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 5.2e-141 505.8 590 55.8
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 2.9e-139 500.0 587 56.4
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.7e-139 499.6 546 58.6
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 3.7e-139 499.6 588 54.9
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.9e-138 497.3 544 56.4
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 6.0e-137 492.3 566 56.0
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.0e-136 491.5 400 68.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.9e-136 489.6 475 61.7
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 6.6e-136 488.8 551 55.7
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.5e-135 487.6 495 58.2
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 2.5e-135 486.9 483 61.9
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 5.6e-135 485.7 567 55.6
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 9.5e-135 485.0 414 64.7
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.7e-134 482.6 544 55.5
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.8e-133 480.7 592 54.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 3.1e-133 479.9 489 59.1
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 3.1e-133 479.9 534 56.0
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 4.0e-133 479.6 554 55.4
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 6.8e-133 478.8 540 57.0
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 2.0e-132 477.2 474 60.5
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 2.6e-132 476.9 542 58.1
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 5.8e-132 475.7 478 59.0
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 7.5e-132 475.3 484 58.9
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 1.3e-131 474.6 479 59.3
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.7e-131 474.2 447 62.9
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.7e-131 474.2 592 51.5
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.2e-131 473.8 585 54.2
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.2e-131 473.8 549 55.2
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 3.7e-131 473.0 574 54.9
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 4.9e-131 472.6 530 54.7
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 6.4e-131 472.2 511 57.7
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 8.3e-131 471.9 478 58.2
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 2.4e-130 470.3 591 53.0
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.4e-130 470.3 429 62.5
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 2.4e-130 470.3 504 57.3
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 4.1e-130 469.5 596 51.7
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 7.1e-130 468.8 539 54.4
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 7.8e-129 465.3 445 61.6
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 3.0e-128 463.4 489 57.7
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.9e-128 463.0 524 55.5
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 3.9e-128 463.0 541 54.2
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 6.6e-128 462.2 469 58.8
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.5e-127 461.1 496 57.5
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 1.9e-127 460.7 600 51.0
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.3e-127 459.5 434 64.3
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 5.6e-127 459.1 483 59.6
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 7.3e-127 458.8 574 51.4
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.2e-126 458.0 471 56.7
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 2.8e-126 456.8 454 60.4
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.6e-126 456.4 490 58.8
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.6e-126 456.4 480 56.7
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 3.6e-126 456.4 557 54.4
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.2e-126 455.7 510 53.9
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 1.4e-125 454.5 564 54.1
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.3e-125 453.8 430 62.6
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.3e-125 453.8 430 62.6
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 7.6e-124 448.7 599 51.9
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 7.6e-124 448.7 516 53.3
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.7e-123 447.6 479 56.8
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.7e-123 447.6 415 62.2
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.2e-123 447.2 570 52.5
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 4.9e-123 446.0 410 64.4
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 8.4e-123 445.3 579 51.3
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.4e-122 444.5 476 58.8
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.9e-122 444.1 416 63.7
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.9e-122 444.1 413 59.3
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.2e-121 441.4 481 59.0
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.9e-119 434.1 472 55.5
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.1e-118 430.6 445 60.9
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 4.0e-117 426.4 395 63.8
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 5.2e-117 426.0 610 48.4
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 8.9e-117 425.2 374 65.8
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.0e-116 424.1 615 47.6
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 7.6e-116 422.2 371 64.2
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 9.9e-116 421.8 381 63.5
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 7.1e-114 415.6 421 58.0
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 9.3e-114 415.2 418 57.2
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 3.5e-113 413.3 418 57.2
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 3.5e-113 413.3 418 57.2
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 3.5e-113 413.3 418 57.4
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 6.0e-113 412.5 362 62.7
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 7.8e-113 412.1 418 57.2
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.0e-112 411.8 419 57.5
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.3e-112 411.4 491 56.0
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.3e-112 410.6 349 65.3
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.9e-111 407.5 472 53.6
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.3e-111 406.4 341 69.2
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 7.3e-111 405.6 363 63.9
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 2.1e-110 404.1 417 56.8
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 4.8e-110 402.9 478 53.3
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.4e-109 401.4 671 46.2
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.8e-109 401.0 478 55.6
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 6.9e-109 399.1 343 65.9
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 9.0e-109 398.7 429 55.7
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.2e-108 398.3 456 53.5
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.5e-108 396.4 341 65.7
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 7.6e-108 395.6 343 66.2
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 4.9e-107 392.9 406 57.6
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 8.4e-107 392.1 374 61.5
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.1e-106 391.7 590 49.5
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 4.2e-106 389.8 461 51.4
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 4.2e-106 389.8 345 61.7
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.6e-105 387.9 506 49.6
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 7.9e-105 385.6 412 54.6
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.1e-101 375.2 435 52.6
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.5e-100 371.3 303 66.7
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 4.2e-98 363.2 365 58.4
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 9.3e-98 362.1 244 75.0
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 4.8e-94 349.7 424 51.9
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 2.4e-93 347.4 406 51.2
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 3.1e-93 347.1 477 47.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 3.4e-92 343.6 406 51.0
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.2e-89 335.1 639 43.2
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.6e-89 334.7 458 47.6
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.1e-87 328.6 363 55.1
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.5e-87 328.2 243 68.3
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 9.0e-85 318.9 372 53.5
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 2.0e-84 317.8 364 54.4
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 5.9e-84 316.2 601 43.1
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 3.6e-81 307.0 374 51.1
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 7.9e-81 305.8 255 65.9
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.5e-79 301.6 420 45.0
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 1.5e-76 291.6 371 48.8
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.2e-73 282.0 244 64.8
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 3.9e-72 276.9 391 46.0
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 8.5e-67 259.2 257 54.1
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 3.6e-65 253.8 183 71.0
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 2.3e-64 251.1 378 45.2
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 8.2e-62 242.7 468 40.6
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 5.3e-61 240.0 179 70.9
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 2.6e-60 237.7 529 37.2
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 1.3e-59 235.3 251 56.6
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 2.6e-55 221.1 348 48.0
Nitab4.5_0012104g0020 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.0e-52 211.5 135 76.3
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 8.8e-48 196.1 132 73.5
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 6.3e-46 189.9 149 69.1
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.8e-45 188.3 467 34.0
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 7.0e-45 186.4 148 64.2
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 3.8e-43 180.6 265 44.5
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 2.3e-40 171.4 124 74.2
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 8.9e-32 142.9 134 56.0
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 5.4e-29 133.7 225 40.9
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.8e-24 118.6 72 81.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 8.9e-24 116.3 74 78.4
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 2.6e-23 114.8 117 63.2
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.4e-21 109.0 199 38.2
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 1.9e-18 98.6 219 41.6
FAN25G2354 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.5e-18 98.2 219 41.6
Nitab4.5_0000914g0160 Nicotiana tabacum HOM05D003093 ORTHO05D023197 1.2e-17 95.9 170 46.5
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 6.4e-14 83.6 81 49.4
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 6.4e-14 83.6 125 47.2
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.3e-14 83.2 451 24.6
Aqoxy7G01480 Aquilegia oxysepala HOM05D003093 ORTHO05D077548 1.6e-12 79.0 139 42.4
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 3.5e-12 77.8 60 70.0
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 5.1e-11 73.9 64 53.1
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 5.1e-11 73.9 64 53.1
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 5.1e-11 73.9 64 53.1
Atru.chr12.589 Acer truncatum HOM05D003093 ORTHO05D015210 1.1e-10 72.8 65 55.4
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 2.5e-10 71.6 64 51.6
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 2.5e-10 71.6 64 51.6
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 2.5e-10 71.6 64 51.6
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 2.5e-10 71.6 67 50.7
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 5.6e-10 70.5 89 52.8
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 1.6e-09 68.9 65 47.7
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 2.1e-09 68.6 64 50.0
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 4.0e-08 64.3 60 61.7
Psat2g026440 Pisum sativum HOM05D016485 ORTHO05D000844 3.8e-06 57.8 44 65.9
Psat2g026480 Pisum sativum HOM05D016485 ORTHO05D000844 3.8e-06 57.8 44 65.9


User provided reference genes

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