Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05846 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 2.5e-167 592.0 299 100.0
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 5.0e-35 152.5 280 41.4
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 3.4e-31 139.8 211 40.8
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 4.9e-30 136.0 243 39.1
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 1.1e-29 134.8 248 39.5
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 1.7e-27 127.5 246 36.6
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 2.5e-26 123.6 240 39.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.2e-25 121.3 272 34.6
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 1.6e-25 120.9 236 39.4
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 4.7e-25 119.4 257 35.4
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 6.2e-25 119.0 233 37.3
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 8.1e-25 118.6 273 33.0
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 1.1e-24 118.2 254 35.8
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 1.4e-24 117.9 251 35.5
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 3.1e-24 116.7 244 38.9
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 3.1e-24 116.7 231 37.2
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 6.8e-24 115.5 233 36.5
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 8.9e-24 115.2 234 36.8
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 8.9e-24 115.2 228 36.4
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 1.5e-23 114.4 227 34.4
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 3.4e-23 113.2 234 36.3
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 1.7e-22 110.9 270 35.2
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 2.2e-22 110.5 234 34.6
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 4.9e-22 109.4 215 34.0
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 4.9e-22 109.4 254 33.5
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 1.4e-21 107.8 227 34.4
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 1.9e-21 107.5 231 33.8
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 1.9e-21 107.5 206 35.4
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 3.2e-21 106.7 226 36.3
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 3.2e-21 106.7 232 34.5
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 3.2e-21 106.7 232 32.3
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 7.1e-21 105.5 247 36.0
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 9.2e-21 105.1 246 34.6
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 9.2e-21 105.1 215 32.6
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 1.6e-20 104.4 225 34.2
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 2.7e-20 103.6 232 33.6
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 3.5e-20 103.2 228 33.8
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 4.6e-20 102.8 250 32.8
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 6.0e-20 102.4 203 37.9
Atru.chr7.2154 Acer truncatum HOM05D001880 ORTHO05D004730 1.7e-19 100.9 206 38.3
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 1.7e-19 100.9 260 31.2
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 3.0e-19 100.1 203 38.9
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 6.6e-19 99.0 220 34.5
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 1.1e-18 98.2 228 32.9
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 1.5e-18 97.8 241 33.2
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.9e-18 97.4 230 33.5
unitig_747.g21869 Utricularia gibba HOM05D001880 ORTHO05D004730 1.9e-18 97.4 245 33.1
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 2.5e-18 97.1 230 35.7
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 2.5e-18 97.1 223 33.2
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.5e-18 97.1 209 32.1
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 3.3e-18 96.7 246 31.7
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 4.3e-18 96.3 231 35.1
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 5.6e-18 95.9 239 33.5
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 5.6e-18 95.9 228 33.3
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 7.3e-18 95.5 213 35.2
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 7.3e-18 95.5 244 33.2
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 9.5e-18 95.1 266 28.2
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 9.5e-18 95.1 236 33.1
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 1.2e-17 94.7 235 32.3
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 1.2e-17 94.7 82 63.4
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 1.6e-17 94.4 209 32.5
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 2.8e-17 93.6 235 32.8
EL10Ac2g04069 Beta vulgaris HOM05D001880 ORTHO05D004730 2.8e-17 93.6 265 31.3
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 2.8e-17 93.6 235 33.2
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 2.8e-17 93.6 200 35.5
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 2.8e-17 93.6 239 32.2
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 3.6e-17 93.2 200 35.0
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 3.6e-17 93.2 200 35.0
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 3.6e-17 93.2 200 35.0
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 3.6e-17 93.2 82 58.5
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 4.7e-17 92.8 232 33.2
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 6.2e-17 92.4 200 35.5
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 6.2e-17 92.4 200 35.5
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 6.2e-17 92.4 227 33.0
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 6.2e-17 92.4 240 30.4
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 6.2e-17 92.4 230 32.6
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 8.1e-17 92.0 230 34.3
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 8.1e-17 92.0 209 30.1
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 1.4e-16 91.3 258 29.8
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 1.8e-16 90.9 246 28.0
Gohir.A07G023700 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.8e-16 90.9 232 29.3
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 1.8e-16 90.9 231 34.6
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 3.1e-16 90.1 219 34.7
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.1e-16 90.1 209 29.7
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 3.1e-16 90.1 224 31.7
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 3.1e-16 90.1 234 29.9
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.0e-16 89.7 88 55.7
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 4.0e-16 89.7 240 30.4
Glyma.14G143700 Glycine max HOM05D001880 ORTHO05D004730 5.2e-16 89.4 239 31.0
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 6.8e-16 89.0 205 29.8
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 6.8e-16 89.0 211 30.8
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 8.9e-16 88.6 231 33.8
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 1.2e-15 88.2 254 31.1
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 1.2e-15 88.2 275 26.5
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 1.2e-15 88.2 81 56.8
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 1.5e-15 87.8 82 56.1
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 2.6e-15 87.0 116 44.0
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 3.4e-15 86.7 82 58.5
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 3.4e-15 86.7 223 28.7
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 3.4e-15 86.7 62 66.1
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 4.4e-15 86.3 219 32.0
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 4.4e-15 86.3 224 32.6
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 4.4e-15 86.3 223 30.9
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 4.4e-15 86.3 204 34.8
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 4.4e-15 86.3 225 31.1
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 4.4e-15 86.3 71 59.2
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 7.6e-15 85.5 62 64.5
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 7.6e-15 85.5 62 64.5
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 7.6e-15 85.5 62 64.5
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 7.6e-15 85.5 62 66.1
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 9.9e-15 85.1 82 57.3
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 1.3e-14 84.7 203 34.5
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.3e-14 84.7 84 56.0
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 1.7e-14 84.3 195 33.8
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 3.8e-14 83.2 228 30.3
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 4.9e-14 82.8 234 29.9
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 6.4e-14 82.4 273 28.9
MD15G1097100 Malus domestica HOM05D001880 ORTHO05D004730 8.4e-14 82.0 57 71.9
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 1.4e-13 81.3 82 52.4
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 2.4e-13 80.5 206 31.6
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 2.4e-13 80.5 231 30.3
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 2.4e-13 80.5 96 47.9
Zm00001eb246770 Zea mays HOM05D001880 ORTHO05D004730 2.4e-13 80.5 228 30.3
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 3.2e-13 80.1 78 56.4
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 4.2e-13 79.7 78 56.4
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 7.1e-13 79.0 81 49.4
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 7.1e-13 79.0 216 28.7
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 9.2e-13 78.6 79 49.4
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 9.2e-13 78.6 215 29.3
AagrBONN_evm.TU.Sc2ySwM_228.5048 Anthoceros agrestis HOM05D001880 ORTHO05D004730 2.1e-12 77.4 64 56.2
Duzib235G1154 Durio zibethinus HOM05D001880 ORTHO05D004730 3.0e-11 73.6 221 28.1
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 6.6e-11 72.4 81 45.7
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 8.7e-11 72.0 193 29.0
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 2.5e-10 70.5 246 26.8
SMO343G0026 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 5.6e-10 69.3 64 46.9
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 2.8e-09 67.0 197 29.4
Mapoly0005s0125 Marchantia polymorpha HOM05D001880 ORTHO05D004730 3.6e-09 66.6 81 42.0
Pp3c21_14880 Physcomitrium patens HOM05D001880 ORTHO05D004730 1.8e-08 64.3 75 40.0
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 1.2e-07 61.6 242 26.4
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 1.2e-07 61.6 202 31.2
Actinidia13311 Actinidia chinensis HOM05D001880 ORTHO05D004730 4.4e-07 59.7 213 25.4
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 9.9e-07 58.5 132 37.1
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 9.9e-07 58.5 132 37.1
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 9.9e-07 58.5 228 29.8
SMO367G0348 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 2.9e-06 57.0 55 47.3
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 8.4e-06 55.5 235 26.8
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 8.4e-06 55.5 84 45.2


User provided reference genes

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