Gene: Solyc08g068310.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g068310.3
  • Transcript Identifier Solyc08g068310.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 55505722-55511459 : positive

Gene Family Information

  • ID HOM05D001880
  • #Genes/#Species 350/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g068310.3.1
  • uniprot A0A3Q7HPT6
  • gene_id Solyc08g068310

Descriptions

  • Description La protein 1 (AHRD V3.3 *** A0A1U8E2J1_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT4G32720
GO:0034470
ISO
PLAZA Integrative OrthologyncRNA processing AT4G32720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G32720
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G32720
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G32720
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G32720
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G32720
GO:1990904
IEA
GOA Databaseribonucleoprotein complex
GO:1990904
IEA
InterProribonucleoprotein complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006630 La-type HTH domain
IPR035979 RNA-binding domain superfamily
IPR002344 Lupus La protein
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR014886 La protein, xRRM domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.7.3 RNA processing.RNA chaperone activities.RNA chaperone (LA/IRP2)