Gene: Carub.0007s0776

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0007s0776
  • Transcript Identifier Carub.0007s0776.1
  • Gene Type Coding gene
  • Location scaffold_7 : 2933597-2936058 : negative

Gene Family Information

  • ID HOM05D001880
  • #Genes/#Species 350/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0007s0776.v1.1
  • pacid 39235707
  • synonym Carubv10004849m.g

Descriptions

  • Description K11090 - lupus La protein (LA, SSB)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0034470
ISO
PLAZA Integrative OrthologyncRNA processing AT4G32720
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT4G32720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G32720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:1990904
IEA
InterProribonucleoprotein complex
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G32720
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G32720
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G32720
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G32720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002344 Lupus La protein
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR006630 La-type HTH domain
IPR014886 La protein, xRRM domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.7.3 RNA processing.RNA chaperone activities.RNA chaperone (LA/IRP2)