Gene: Sopen08g022160

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g022160
  • Transcript Identifier Sopen08g022160.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 61644760-61650491 : positive

Gene Family Information

  • ID HOM05D001880
  • #Genes/#Species 350/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g022160.1

Descriptions

  • Description Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. | La protein 1 (La1) | FUNCTIONS IN: RNA binding | INVOLVED IN: embryo development, ribosome biogenesis | LOCATED IN: nucleoplasm, cell wall | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , RNA-binding protein Lupus La , Lupus La protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , RNA-binding motif | BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0034470
ISO
PLAZA Integrative OrthologyncRNA processing AT4G32720
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT4G32720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G32720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:1990904
IEA
InterProribonucleoprotein complex
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G32720
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G32720
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G32720
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G32720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR014886 La protein, xRRM domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR006630 La-type HTH domain
IPR002344 Lupus La protein
Mapman id Description
16.7.3 RNA processing.RNA chaperone activities.RNA chaperone (LA/IRP2)