Gene: Lsat_1_v5_gn_5_33160
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_5_33160
- Transcript Identifier Lsat_1_v5_gn_5_33160.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_5 : 71362216-71364842 : negative
Gene Family Information
- ID HOM05D001880
- #Genes/#Species 350/100
- Phylogenetic origin
- ID ORTHO05D004730
- #Genes/#Species 172/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Lsat_1_v5_gn_5_33160.v5
- pacid 38966261
Descriptions
- Description K11090 - lupus La protein (LA, SSB)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0034470 | ISO | PLAZA Integrative Orthology | ncRNA processing | AT4G32720 |
| GO:0006364 | ISO | PLAZA Integrative Orthology | rRNA processing | AT4G32720 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G32720 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:1990904 | IEA | InterPro | ribonucleoprotein complex | |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT4G32720 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G32720 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G32720 |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT4G32720 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000504 | RNA recognition motif domain |
| IPR002344 | Lupus La protein |
| IPR006630 | La-type HTH domain |
| IPR014886 | La protein, xRRM domain |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.7.3 | RNA processing.RNA chaperone activities.RNA chaperone (LA/IRP2) |